Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1224 and Dsui_1225 are separated by 83 nucleotides Dsui_1225 and Dsui_1226 are separated by 103 nucleotides Dsui_1226 and Dsui_1227 are separated by 250 nucleotides
Dsui_1224: Dsui_1224 - leucyl-tRNA synthetase, at 1,278,659 to 1,281,328
_1224
Dsui_1225: Dsui_1225 - sporulation related protein, at 1,281,412 to 1,282,305
_1225
Dsui_1226: Dsui_1226 - hypothetical protein, at 1,282,409 to 1,282,768
_1226
Dsui_1227: Dsui_1227 - DNA/RNA helicase, superfamily I, at 1,283,019 to 1,285,226
_1227
Position (kb)
1281
1282
1283 Strain fitness (log2 ratio)
-1
0
1 at 1281.325 kb on + strand at 1281.386 kb on + strand at 1281.394 kb on - strand at 1281.403 kb on + strand at 1281.435 kb on + strand at 1281.436 kb on - strand at 1281.443 kb on + strand at 1281.501 kb on + strand at 1281.527 kb on + strand, within Dsui_1225 at 1281.540 kb on - strand, within Dsui_1225 at 1281.657 kb on + strand, within Dsui_1225 at 1281.672 kb on - strand, within Dsui_1225 at 1281.811 kb on - strand at 1281.843 kb on - strand, within Dsui_1225 at 1281.864 kb on - strand at 1281.925 kb on + strand, within Dsui_1225 at 1281.990 kb on + strand, within Dsui_1225 at 1282.104 kb on + strand, within Dsui_1225 at 1282.435 kb on + strand at 1282.461 kb on - strand, within Dsui_1226 at 1282.533 kb on - strand, within Dsui_1226 at 1282.544 kb on + strand, within Dsui_1226 at 1282.579 kb on + strand, within Dsui_1226 at 1282.618 kb on + strand, within Dsui_1226 at 1282.777 kb on + strand at 1282.825 kb on - strand at 1282.843 kb on - strand at 1282.964 kb on + strand at 1282.969 kb on + strand at 1282.975 kb on + strand at 1282.983 kb on - strand at 1283.020 kb on + strand at 1283.054 kb on + strand at 1283.091 kb on + strand at 1283.257 kb on + strand, within Dsui_1227
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S) remove 1,281,325 + -0.4 1,281,386 + -0.2 1,281,394 - -0.4 1,281,403 + -0.3 1,281,435 + -0.1 1,281,436 - -0.8 1,281,443 + -0.1 1,281,501 + +0.6 1,281,527 + Dsui_1225 0.13 -0.2 1,281,540 - Dsui_1225 0.14 -0.7 1,281,657 + Dsui_1225 0.27 -0.2 1,281,672 - Dsui_1225 0.29 -0.1 1,281,811 - +0.4 1,281,843 - Dsui_1225 0.48 -0.6 1,281,864 - -0.8 1,281,925 + Dsui_1225 0.57 -0.4 1,281,990 + Dsui_1225 0.65 -0.2 1,282,104 + Dsui_1225 0.77 -0.5 1,282,435 + +0.1 1,282,461 - Dsui_1226 0.14 -0.4 1,282,533 - Dsui_1226 0.34 +0.3 1,282,544 + Dsui_1226 0.38 -0.0 1,282,579 + Dsui_1226 0.47 -0.3 1,282,618 + Dsui_1226 0.58 -0.2 1,282,777 + +0.5 1,282,825 - +0.1 1,282,843 - -0.4 1,282,964 + -0.9 1,282,969 + +0.0 1,282,975 + -0.3 1,282,983 - -1.1 1,283,020 + +0.0 1,283,054 + +0.7 1,283,091 + +0.2 1,283,257 + Dsui_1227 0.11 +0.0
Or see this region's nucleotide sequence