Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0948 and brnQ are separated by 611 nucleotides brnQ and xerD are separated by 80 nucleotides
SO0948: SO0948 - conserved hypothetical protein (NCBI ptt file), at 983,738 to 984,400
SO0948
SO0949: brnQ - branched-chain amino acid transport system II carrier protein BrnQ (NCBI ptt file), at 985,012 to 986,400
brnQ
SO0950: xerD - integrase/recombinase XerD (NCBI ptt file), at 986,481 to 987,383
xerD
Position (kb) 985
986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 984.013 kb on - strand, within SO0948 at 984.045 kb on + strand, within SO0948 at 984.181 kb on + strand, within SO0948 at 984.181 kb on + strand, within SO0948 at 984.189 kb on - strand, within SO0948 at 984.189 kb on - strand, within SO0948 at 984.195 kb on - strand, within SO0948 at 984.195 kb on - strand, within SO0948 at 984.210 kb on - strand, within SO0948 at 984.229 kb on - strand, within SO0948 at 984.243 kb on + strand, within SO0948 at 984.259 kb on + strand, within SO0948 at 984.274 kb on + strand, within SO0948 at 984.279 kb on + strand, within SO0948 at 984.282 kb on - strand, within SO0948 at 984.287 kb on - strand, within SO0948 at 984.319 kb on - strand, within SO0948 at 984.345 kb on + strand at 984.345 kb on + strand at 984.345 kb on + strand at 984.345 kb on + strand at 984.345 kb on + strand at 984.353 kb on - strand at 984.353 kb on - strand at 984.355 kb on + strand at 984.391 kb on - strand at 984.395 kb on - strand at 984.415 kb on - strand at 984.430 kb on + strand at 984.438 kb on - strand at 984.455 kb on - strand at 984.629 kb on - strand at 985.153 kb on + strand, within brnQ at 985.161 kb on - strand, within brnQ at 985.167 kb on - strand, within brnQ at 985.202 kb on - strand, within brnQ at 985.202 kb on - strand, within brnQ at 985.203 kb on - strand, within brnQ at 985.206 kb on + strand, within brnQ at 985.297 kb on + strand, within brnQ at 985.327 kb on - strand, within brnQ at 985.329 kb on - strand, within brnQ at 985.329 kb on - strand, within brnQ at 985.478 kb on + strand, within brnQ at 985.619 kb on + strand, within brnQ at 985.627 kb on + strand, within brnQ at 985.627 kb on + strand, within brnQ at 985.627 kb on + strand, within brnQ at 985.727 kb on - strand, within brnQ at 985.730 kb on + strand, within brnQ at 985.912 kb on + strand, within brnQ at 986.149 kb on - strand, within brnQ at 986.184 kb on + strand, within brnQ at 986.205 kb on + strand, within brnQ at 986.333 kb on + strand at 986.333 kb on + strand at 986.341 kb on - strand at 986.341 kb on - strand at 986.341 kb on - strand at 986.341 kb on - strand at 986.400 kb on + strand at 986.541 kb on + strand at 986.555 kb on - strand at 986.561 kb on + strand at 986.614 kb on + strand, within xerD at 986.622 kb on - strand, within xerD at 986.622 kb on - strand, within xerD at 986.704 kb on - strand, within xerD at 986.704 kb on - strand, within xerD at 986.762 kb on + strand, within xerD at 986.794 kb on + strand, within xerD at 986.818 kb on - strand, within xerD at 986.841 kb on - strand, within xerD at 986.861 kb on + strand, within xerD at 986.875 kb on + strand, within xerD at 986.880 kb on + strand, within xerD at 986.880 kb on + strand, within xerD at 986.883 kb on - strand, within xerD at 986.883 kb on - strand, within xerD at 986.920 kb on + strand, within xerD at 986.925 kb on + strand, within xerD at 986.973 kb on - strand, within xerD at 986.983 kb on + strand, within xerD at 987.013 kb on - strand, within xerD at 987.049 kb on - strand, within xerD at 987.227 kb on - strand, within xerD at 987.284 kb on - strand, within xerD at 987.312 kb on + strand at 987.360 kb on - strand at 987.377 kb on + strand at 987.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 984,013 - SO0948 0.41 -0.8 984,045 + SO0948 0.46 +0.7 984,181 + SO0948 0.67 +0.3 984,181 + SO0948 0.67 -0.4 984,189 - SO0948 0.68 +0.6 984,189 - SO0948 0.68 +0.6 984,195 - SO0948 0.69 -0.5 984,195 - SO0948 0.69 -1.6 984,210 - SO0948 0.71 +0.6 984,229 - SO0948 0.74 +0.3 984,243 + SO0948 0.76 -0.8 984,259 + SO0948 0.79 -0.3 984,274 + SO0948 0.81 +0.7 984,279 + SO0948 0.82 +0.2 984,282 - SO0948 0.82 -0.5 984,287 - SO0948 0.83 -2.1 984,319 - SO0948 0.88 -1.4 984,345 + -0.1 984,345 + +0.1 984,345 + -1.1 984,345 + -1.2 984,345 + -1.1 984,353 - +0.8 984,353 - +0.1 984,355 + +0.6 984,391 - -0.1 984,395 - -0.4 984,415 - -0.5 984,430 + +0.6 984,438 - +0.1 984,455 - +0.1 984,629 - +0.6 985,153 + brnQ SO0949 0.10 -0.7 985,161 - brnQ SO0949 0.11 -1.6 985,167 - brnQ SO0949 0.11 -2.0 985,202 - brnQ SO0949 0.14 -2.0 985,202 - brnQ SO0949 0.14 +0.1 985,203 - brnQ SO0949 0.14 -1.4 985,206 + brnQ SO0949 0.14 -1.0 985,297 + brnQ SO0949 0.21 -1.6 985,327 - brnQ SO0949 0.23 -1.8 985,329 - brnQ SO0949 0.23 -3.4 985,329 - brnQ SO0949 0.23 -0.6 985,478 + brnQ SO0949 0.34 -0.1 985,619 + brnQ SO0949 0.44 -1.4 985,627 + brnQ SO0949 0.44 -2.0 985,627 + brnQ SO0949 0.44 -0.0 985,627 + brnQ SO0949 0.44 -0.7 985,727 - brnQ SO0949 0.51 -0.6 985,730 + brnQ SO0949 0.52 -0.9 985,912 + brnQ SO0949 0.65 -1.3 986,149 - brnQ SO0949 0.82 -0.5 986,184 + brnQ SO0949 0.84 -1.1 986,205 + brnQ SO0949 0.86 +0.6 986,333 + +0.4 986,333 + -0.0 986,341 - -1.3 986,341 - -0.3 986,341 - -1.4 986,341 - -0.4 986,400 + -0.1 986,541 + +1.6 986,555 - -0.6 986,561 + -0.7 986,614 + xerD SO0950 0.15 -0.7 986,622 - xerD SO0950 0.16 -1.9 986,622 - xerD SO0950 0.16 -1.3 986,704 - xerD SO0950 0.25 -1.3 986,704 - xerD SO0950 0.25 -1.5 986,762 + xerD SO0950 0.31 -1.4 986,794 + xerD SO0950 0.35 -0.4 986,818 - xerD SO0950 0.37 -0.6 986,841 - xerD SO0950 0.40 -1.3 986,861 + xerD SO0950 0.42 -1.6 986,875 + xerD SO0950 0.44 +0.0 986,880 + xerD SO0950 0.44 +0.2 986,880 + xerD SO0950 0.44 -1.4 986,883 - xerD SO0950 0.45 -1.1 986,883 - xerD SO0950 0.45 -1.5 986,920 + xerD SO0950 0.49 -1.1 986,925 + xerD SO0950 0.49 -1.1 986,973 - xerD SO0950 0.54 -0.3 986,983 + xerD SO0950 0.56 -1.3 987,013 - xerD SO0950 0.59 +0.4 987,049 - xerD SO0950 0.63 -2.0 987,227 - xerD SO0950 0.83 -0.4 987,284 - xerD SO0950 0.89 -2.5 987,312 + -1.0 987,360 - -3.4 987,377 + -0.2 987,385 - -1.4
Or see this region's nucleotide sequence