Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0922 and Dsui_0923 are separated by 29 nucleotides Dsui_0923 and Dsui_0924 are separated by 76 nucleotides
Dsui_0922: Dsui_0922 - outer membrane receptor protein, at 949,007 to 951,028
_0922
Dsui_0923: Dsui_0923 - putative iron-regulated membrane protein, at 951,058 to 952,206
_0923
Dsui_0924: Dsui_0924 - putative permease, at 952,283 to 953,743
_0924
Position (kb) 951
952
953 Strain fitness (log2 ratio) -1
0
1
2 at 950.244 kb on + strand, within Dsui_0922 at 950.307 kb on - strand, within Dsui_0922 at 950.399 kb on - strand, within Dsui_0922 at 950.400 kb on - strand, within Dsui_0922 at 950.415 kb on + strand, within Dsui_0922 at 950.415 kb on + strand, within Dsui_0922 at 950.447 kb on - strand, within Dsui_0922 at 950.805 kb on + strand, within Dsui_0922 at 950.974 kb on + strand at 951.030 kb on - strand at 951.056 kb on + strand at 951.189 kb on - strand at 951.208 kb on - strand, within Dsui_0923 at 951.252 kb on - strand, within Dsui_0923 at 951.467 kb on - strand, within Dsui_0923 at 951.527 kb on + strand, within Dsui_0923 at 951.638 kb on - strand at 951.657 kb on - strand, within Dsui_0923 at 951.761 kb on - strand, within Dsui_0923 at 951.761 kb on - strand, within Dsui_0923 at 951.782 kb on - strand, within Dsui_0923 at 951.943 kb on - strand, within Dsui_0923 at 952.022 kb on + strand, within Dsui_0923 at 952.027 kb on + strand at 952.027 kb on + strand, within Dsui_0923 at 952.030 kb on - strand, within Dsui_0923 at 952.051 kb on + strand, within Dsui_0923 at 952.062 kb on + strand, within Dsui_0923 at 952.159 kb on - strand at 952.208 kb on - strand at 952.249 kb on + strand at 952.318 kb on - strand at 952.402 kb on - strand at 952.526 kb on - strand, within Dsui_0924 at 952.563 kb on + strand at 952.621 kb on + strand at 952.621 kb on + strand, within Dsui_0924 at 952.629 kb on - strand at 952.629 kb on - strand, within Dsui_0924 at 952.629 kb on - strand at 952.773 kb on - strand, within Dsui_0924 at 952.883 kb on - strand at 952.889 kb on + strand, within Dsui_0924 at 952.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5 remove 950,244 + Dsui_0922 0.61 -0.8 950,307 - Dsui_0922 0.64 -0.5 950,399 - Dsui_0922 0.69 -0.0 950,400 - Dsui_0922 0.69 -0.1 950,415 + Dsui_0922 0.70 +0.0 950,415 + Dsui_0922 0.70 -0.0 950,447 - Dsui_0922 0.71 -0.2 950,805 + Dsui_0922 0.89 -0.3 950,974 + -0.2 951,030 - +1.1 951,056 + -0.1 951,189 - +1.5 951,208 - Dsui_0923 0.13 -0.4 951,252 - Dsui_0923 0.17 -0.3 951,467 - Dsui_0923 0.36 -0.7 951,527 + Dsui_0923 0.41 -0.1 951,638 - +0.2 951,657 - Dsui_0923 0.52 -1.2 951,761 - Dsui_0923 0.61 -1.1 951,761 - Dsui_0923 0.61 -0.6 951,782 - Dsui_0923 0.63 -0.4 951,943 - Dsui_0923 0.77 -0.4 952,022 + Dsui_0923 0.84 -0.7 952,027 + -1.2 952,027 + Dsui_0923 0.84 -1.2 952,030 - Dsui_0923 0.85 -0.7 952,051 + Dsui_0923 0.86 -1.5 952,062 + Dsui_0923 0.87 -0.2 952,159 - -1.5 952,208 - +1.1 952,249 + -0.7 952,318 - -1.3 952,402 - +0.4 952,526 - Dsui_0924 0.17 -0.1 952,563 + +0.7 952,621 + -1.5 952,621 + Dsui_0924 0.23 -0.8 952,629 - +2.7 952,629 - Dsui_0924 0.24 +0.6 952,629 - -1.2 952,773 - Dsui_0924 0.34 -0.3 952,883 - +0.2 952,889 + Dsui_0924 0.41 +0.2 952,889 + +0.1
Or see this region's nucleotide sequence