Experiment: Gly-DL-Asp (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvT and gcvH are separated by 25 nucleotides gcvH and gcvP are separated by 122 nucleotides
SO0779: gcvT - glycine cleavage system T protein (NCBI ptt file), at 791,897 to 792,991
gcvT
SO0780: gcvH - glycine cleavage system H protein (NCBI ptt file), at 793,017 to 793,406
gcvH
SO0781: gcvP - glycine cleavage system P protein (NCBI ptt file), at 793,529 to 796,417
gcvP
Position (kb) 793
794 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 792.067 kb on + strand, within gcvT at 792.143 kb on + strand, within gcvT at 792.151 kb on - strand, within gcvT at 792.151 kb on - strand, within gcvT at 792.230 kb on + strand, within gcvT at 792.230 kb on + strand, within gcvT at 792.238 kb on - strand, within gcvT at 792.238 kb on - strand, within gcvT at 792.238 kb on - strand, within gcvT at 792.288 kb on + strand, within gcvT at 792.363 kb on - strand, within gcvT at 792.415 kb on - strand, within gcvT at 792.458 kb on + strand, within gcvT at 792.475 kb on - strand, within gcvT at 792.535 kb on - strand, within gcvT at 792.540 kb on + strand, within gcvT at 792.540 kb on + strand, within gcvT at 792.554 kb on + strand, within gcvT at 792.590 kb on + strand, within gcvT at 792.598 kb on - strand, within gcvT at 792.667 kb on + strand, within gcvT at 792.810 kb on + strand, within gcvT at 792.855 kb on + strand, within gcvT at 792.945 kb on + strand at 793.082 kb on - strand, within gcvH at 793.093 kb on - strand, within gcvH at 793.105 kb on - strand, within gcvH at 793.115 kb on - strand, within gcvH at 793.179 kb on + strand, within gcvH at 793.187 kb on - strand, within gcvH at 793.248 kb on - strand, within gcvH at 793.259 kb on + strand, within gcvH at 793.262 kb on - strand, within gcvH at 793.277 kb on - strand, within gcvH at 793.287 kb on - strand, within gcvH at 793.353 kb on + strand, within gcvH at 793.536 kb on + strand at 793.544 kb on - strand at 793.694 kb on + strand at 794.011 kb on + strand, within gcvP at 794.019 kb on - strand, within gcvP at 794.019 kb on - strand, within gcvP at 794.087 kb on - strand, within gcvP at 794.267 kb on + strand, within gcvP at 794.313 kb on + strand, within gcvP at 794.313 kb on + strand, within gcvP at 794.318 kb on + strand, within gcvP at 794.321 kb on - strand, within gcvP at 794.341 kb on + strand, within gcvP
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-DL-Asp (C) remove 792,067 + gcvT SO0779 0.16 -2.8 792,143 + gcvT SO0779 0.22 -3.0 792,151 - gcvT SO0779 0.23 -1.1 792,151 - gcvT SO0779 0.23 -3.7 792,230 + gcvT SO0779 0.30 -2.2 792,230 + gcvT SO0779 0.30 -4.0 792,238 - gcvT SO0779 0.31 -3.2 792,238 - gcvT SO0779 0.31 -3.5 792,238 - gcvT SO0779 0.31 -1.3 792,288 + gcvT SO0779 0.36 -1.3 792,363 - gcvT SO0779 0.43 -2.3 792,415 - gcvT SO0779 0.47 -1.3 792,458 + gcvT SO0779 0.51 -1.9 792,475 - gcvT SO0779 0.53 -3.0 792,535 - gcvT SO0779 0.58 -4.8 792,540 + gcvT SO0779 0.59 -5.4 792,540 + gcvT SO0779 0.59 -3.4 792,554 + gcvT SO0779 0.60 -3.6 792,590 + gcvT SO0779 0.63 +0.2 792,598 - gcvT SO0779 0.64 -2.3 792,667 + gcvT SO0779 0.70 -2.2 792,810 + gcvT SO0779 0.83 -4.4 792,855 + gcvT SO0779 0.87 -5.3 792,945 + -3.6 793,082 - gcvH SO0780 0.17 -6.3 793,093 - gcvH SO0780 0.19 -2.8 793,105 - gcvH SO0780 0.23 -2.9 793,115 - gcvH SO0780 0.25 -2.2 793,179 + gcvH SO0780 0.42 -1.8 793,187 - gcvH SO0780 0.44 -2.8 793,248 - gcvH SO0780 0.59 -1.1 793,259 + gcvH SO0780 0.62 -3.9 793,262 - gcvH SO0780 0.63 -1.6 793,277 - gcvH SO0780 0.67 -1.1 793,287 - gcvH SO0780 0.69 -1.1 793,353 + gcvH SO0780 0.86 -1.1 793,536 + -1.9 793,544 - -1.3 793,694 + -5.1 794,011 + gcvP SO0781 0.17 -3.5 794,019 - gcvP SO0781 0.17 -3.4 794,019 - gcvP SO0781 0.17 -2.3 794,087 - gcvP SO0781 0.19 -4.0 794,267 + gcvP SO0781 0.26 -3.7 794,313 + gcvP SO0781 0.27 -3.9 794,313 + gcvP SO0781 0.27 -1.1 794,318 + gcvP SO0781 0.27 -1.9 794,321 - gcvP SO0781 0.27 -2.9 794,341 + gcvP SO0781 0.28 -3.3
Or see this region's nucleotide sequence