Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0944 and SO0945 are separated by 85 nucleotides SO0945 and SO0946 overlap by 1 nucleotides
SO0944: SO0944 - conserved hypothetical protein (NCBI ptt file), at 976,359 to 977,147
SO0944
SO0945: SO0945 - AcrB/AcrD/AcrF family protein (NCBI ptt file), at 977,233 to 980,436
SO0945
SO0946: SO0946 - conserved hypothetical protein (NCBI ptt file), at 980,436 to 981,563
SO0946
Position (kb) 977
978
979
980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 976.235 kb on - strand at 976.242 kb on + strand at 976.308 kb on - strand at 976.378 kb on + strand at 976.464 kb on + strand, within SO0944 at 976.464 kb on + strand, within SO0944 at 976.472 kb on - strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.527 kb on - strand, within SO0944 at 976.554 kb on + strand, within SO0944 at 976.610 kb on + strand, within SO0944 at 976.618 kb on - strand, within SO0944 at 976.736 kb on - strand, within SO0944 at 976.750 kb on + strand, within SO0944 at 976.773 kb on + strand, within SO0944 at 976.793 kb on - strand, within SO0944 at 976.810 kb on + strand, within SO0944 at 976.810 kb on + strand, within SO0944 at 976.818 kb on - strand, within SO0944 at 976.818 kb on - strand, within SO0944 at 976.818 kb on - strand, within SO0944 at 976.832 kb on - strand, within SO0944 at 976.832 kb on - strand, within SO0944 at 976.957 kb on + strand, within SO0944 at 976.962 kb on + strand, within SO0944 at 976.962 kb on + strand, within SO0944 at 976.972 kb on + strand, within SO0944 at 976.980 kb on - strand, within SO0944 at 976.989 kb on + strand, within SO0944 at 977.103 kb on - strand at 977.218 kb on + strand at 977.226 kb on + strand at 977.226 kb on - strand at 977.302 kb on + strand at 977.389 kb on - strand at 977.396 kb on + strand at 977.400 kb on + strand at 977.557 kb on + strand, within SO0945 at 977.648 kb on + strand, within SO0945 at 977.676 kb on + strand, within SO0945 at 977.676 kb on + strand, within SO0945 at 977.684 kb on - strand, within SO0945 at 977.689 kb on + strand, within SO0945 at 977.695 kb on - strand, within SO0945 at 977.697 kb on - strand, within SO0945 at 977.703 kb on + strand, within SO0945 at 977.769 kb on + strand, within SO0945 at 977.800 kb on + strand, within SO0945 at 977.815 kb on - strand, within SO0945 at 977.836 kb on + strand, within SO0945 at 977.862 kb on + strand, within SO0945 at 977.878 kb on + strand, within SO0945 at 977.886 kb on - strand, within SO0945 at 977.886 kb on - strand, within SO0945 at 978.046 kb on - strand, within SO0945 at 978.075 kb on + strand, within SO0945 at 978.075 kb on + strand, within SO0945 at 978.085 kb on + strand, within SO0945 at 978.085 kb on + strand, within SO0945 at 978.085 kb on + strand, within SO0945 at 978.085 kb on + strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.093 kb on - strand, within SO0945 at 978.134 kb on - strand, within SO0945 at 978.146 kb on - strand, within SO0945 at 978.171 kb on + strand, within SO0945 at 978.179 kb on - strand, within SO0945 at 978.246 kb on + strand, within SO0945 at 978.253 kb on + strand, within SO0945 at 978.259 kb on + strand, within SO0945 at 978.260 kb on - strand, within SO0945 at 978.261 kb on - strand, within SO0945 at 978.366 kb on + strand, within SO0945 at 978.479 kb on + strand, within SO0945 at 978.542 kb on + strand, within SO0945 at 978.542 kb on + strand, within SO0945 at 978.542 kb on + strand, within SO0945 at 978.612 kb on + strand, within SO0945 at 978.681 kb on + strand, within SO0945 at 978.681 kb on + strand, within SO0945 at 978.689 kb on - strand, within SO0945 at 978.701 kb on + strand, within SO0945 at 978.706 kb on + strand, within SO0945 at 978.714 kb on - strand, within SO0945 at 978.794 kb on - strand, within SO0945 at 978.802 kb on - strand, within SO0945 at 978.805 kb on + strand, within SO0945 at 978.813 kb on - strand, within SO0945 at 978.854 kb on - strand, within SO0945 at 978.887 kb on + strand, within SO0945 at 979.091 kb on + strand, within SO0945 at 979.111 kb on + strand, within SO0945 at 979.111 kb on + strand, within SO0945 at 979.119 kb on - strand, within SO0945 at 979.400 kb on - strand, within SO0945 at 979.410 kb on - strand, within SO0945 at 979.460 kb on - strand, within SO0945 at 979.473 kb on + strand, within SO0945 at 979.473 kb on + strand, within SO0945 at 979.473 kb on + strand, within SO0945 at 979.540 kb on - strand, within SO0945 at 979.624 kb on + strand, within SO0945 at 979.626 kb on - strand, within SO0945 at 979.626 kb on - strand, within SO0945 at 979.849 kb on - strand, within SO0945 at 979.875 kb on + strand, within SO0945 at 979.902 kb on + strand, within SO0945 at 979.904 kb on + strand, within SO0945 at 979.912 kb on - strand, within SO0945 at 980.074 kb on + strand, within SO0945 at 980.116 kb on + strand at 980.124 kb on - strand at 980.124 kb on - strand at 980.124 kb on - strand at 980.150 kb on - strand at 980.160 kb on - strand at 980.259 kb on + strand at 980.261 kb on - strand at 980.264 kb on + strand at 980.264 kb on + strand at 980.264 kb on + strand at 980.278 kb on - strand at 980.320 kb on - strand at 980.329 kb on + strand at 980.329 kb on + strand at 980.339 kb on + strand at 980.339 kb on + strand at 980.356 kb on + strand at 980.356 kb on + strand at 980.390 kb on + strand at 980.395 kb on + strand at 980.510 kb on - strand at 980.570 kb on + strand, within SO0946 at 980.580 kb on + strand, within SO0946 at 980.641 kb on + strand, within SO0946 at 980.681 kb on + strand, within SO0946 at 980.689 kb on - strand, within SO0946 at 980.714 kb on - strand, within SO0946 at 980.824 kb on + strand, within SO0946 at 980.906 kb on + strand, within SO0946 at 980.914 kb on - strand, within SO0946 at 980.950 kb on - strand, within SO0946 at 980.960 kb on - strand, within SO0946 at 981.025 kb on - strand, within SO0946 at 981.075 kb on + strand, within SO0946 at 981.123 kb on + strand, within SO0946 at 981.198 kb on + strand, within SO0946 at 981.206 kb on - strand, within SO0946 at 981.212 kb on - strand, within SO0946 at 981.271 kb on + strand, within SO0946 at 981.276 kb on + strand, within SO0946 at 981.284 kb on - strand, within SO0946 at 981.406 kb on - strand, within SO0946
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 976,235 - -0.9 976,242 + -2.1 976,308 - +0.5 976,378 + +0.4 976,464 + SO0944 0.13 -0.5 976,464 + SO0944 0.13 +1.0 976,472 - SO0944 0.14 -0.4 976,519 + SO0944 0.20 +1.0 976,519 + SO0944 0.20 +0.2 976,519 + SO0944 0.20 +0.9 976,519 + SO0944 0.20 +0.1 976,527 - SO0944 0.21 -0.4 976,554 + SO0944 0.25 -0.1 976,610 + SO0944 0.32 +1.8 976,618 - SO0944 0.33 +0.4 976,736 - SO0944 0.48 -0.9 976,750 + SO0944 0.50 +0.4 976,773 + SO0944 0.52 +1.1 976,793 - SO0944 0.55 -0.2 976,810 + SO0944 0.57 +0.9 976,810 + SO0944 0.57 +0.9 976,818 - SO0944 0.58 +0.2 976,818 - SO0944 0.58 -0.4 976,818 - SO0944 0.58 -0.7 976,832 - SO0944 0.60 +0.3 976,832 - SO0944 0.60 -0.3 976,957 + SO0944 0.76 +1.0 976,962 + SO0944 0.76 +0.7 976,962 + SO0944 0.76 -0.2 976,972 + SO0944 0.78 -0.3 976,980 - SO0944 0.79 +1.2 976,989 + SO0944 0.80 +0.7 977,103 - +0.0 977,218 + -3.0 977,226 + -1.6 977,226 - +0.0 977,302 + -0.0 977,389 - +0.6 977,396 + +0.2 977,400 + +0.7 977,557 + SO0945 0.10 -0.3 977,648 + SO0945 0.13 -0.7 977,676 + SO0945 0.14 -1.3 977,676 + SO0945 0.14 -2.6 977,684 - SO0945 0.14 +0.1 977,689 + SO0945 0.14 +0.6 977,695 - SO0945 0.14 +0.2 977,697 - SO0945 0.14 -0.1 977,703 + SO0945 0.15 +1.5 977,769 + SO0945 0.17 +0.1 977,800 + SO0945 0.18 -0.4 977,815 - SO0945 0.18 +0.3 977,836 + SO0945 0.19 -0.0 977,862 + SO0945 0.20 -0.7 977,878 + SO0945 0.20 +0.3 977,886 - SO0945 0.20 +0.4 977,886 - SO0945 0.20 +0.0 978,046 - SO0945 0.25 +1.1 978,075 + SO0945 0.26 -0.3 978,075 + SO0945 0.26 +0.2 978,085 + SO0945 0.27 +0.1 978,085 + SO0945 0.27 +1.5 978,085 + SO0945 0.27 -0.1 978,085 + SO0945 0.27 -0.6 978,093 - SO0945 0.27 +0.3 978,093 - SO0945 0.27 -0.5 978,093 - SO0945 0.27 -2.1 978,093 - SO0945 0.27 -0.2 978,093 - SO0945 0.27 -2.9 978,093 - SO0945 0.27 -0.3 978,093 - SO0945 0.27 -0.8 978,093 - SO0945 0.27 -0.9 978,093 - SO0945 0.27 -0.5 978,093 - SO0945 0.27 -0.0 978,093 - SO0945 0.27 +0.6 978,093 - SO0945 0.27 +0.3 978,134 - SO0945 0.28 +0.1 978,146 - SO0945 0.28 +0.2 978,171 + SO0945 0.29 +0.2 978,179 - SO0945 0.30 -1.3 978,246 + SO0945 0.32 -0.5 978,253 + SO0945 0.32 -0.2 978,259 + SO0945 0.32 +0.1 978,260 - SO0945 0.32 +0.3 978,261 - SO0945 0.32 -0.6 978,366 + SO0945 0.35 +1.3 978,479 + SO0945 0.39 -0.1 978,542 + SO0945 0.41 +0.1 978,542 + SO0945 0.41 +0.4 978,542 + SO0945 0.41 -0.3 978,612 + SO0945 0.43 -0.1 978,681 + SO0945 0.45 +0.7 978,681 + SO0945 0.45 -0.2 978,689 - SO0945 0.45 -1.0 978,701 + SO0945 0.46 +1.4 978,706 + SO0945 0.46 -0.0 978,714 - SO0945 0.46 -2.0 978,794 - SO0945 0.49 +0.3 978,802 - SO0945 0.49 +0.2 978,805 + SO0945 0.49 +0.5 978,813 - SO0945 0.49 +0.0 978,854 - SO0945 0.51 +0.4 978,887 + SO0945 0.52 +0.6 979,091 + SO0945 0.58 +0.6 979,111 + SO0945 0.59 +0.6 979,111 + SO0945 0.59 +1.7 979,119 - SO0945 0.59 -0.2 979,400 - SO0945 0.68 -0.6 979,410 - SO0945 0.68 -0.2 979,460 - SO0945 0.70 -0.4 979,473 + SO0945 0.70 -0.2 979,473 + SO0945 0.70 -0.4 979,473 + SO0945 0.70 +0.3 979,540 - SO0945 0.72 -2.1 979,624 + SO0945 0.75 -0.2 979,626 - SO0945 0.75 -0.2 979,626 - SO0945 0.75 -0.4 979,849 - SO0945 0.82 +0.9 979,875 + SO0945 0.82 +0.3 979,902 + SO0945 0.83 -1.1 979,904 + SO0945 0.83 -0.8 979,912 - SO0945 0.84 +0.3 980,074 + SO0945 0.89 +0.1 980,116 + +1.9 980,124 - +0.6 980,124 - +0.1 980,124 - -0.5 980,150 - +1.3 980,160 - -0.6 980,259 + -0.1 980,261 - -0.2 980,264 + -0.0 980,264 + +3.0 980,264 + -0.0 980,278 - -0.3 980,320 - +0.4 980,329 + -0.4 980,329 + -0.4 980,339 + -0.3 980,339 + -0.5 980,356 + +0.9 980,356 + -0.9 980,390 + -0.4 980,395 + +0.3 980,510 - +0.1 980,570 + SO0946 0.12 -1.1 980,580 + SO0946 0.13 -0.3 980,641 + SO0946 0.18 -0.3 980,681 + SO0946 0.22 -0.5 980,689 - SO0946 0.22 +0.1 980,714 - SO0946 0.25 -1.1 980,824 + SO0946 0.34 +0.0 980,906 + SO0946 0.42 -0.7 980,914 - SO0946 0.42 +0.3 980,950 - SO0946 0.46 -0.3 980,960 - SO0946 0.46 -0.6 981,025 - SO0946 0.52 +0.2 981,075 + SO0946 0.57 -1.3 981,123 + SO0946 0.61 +0.0 981,198 + SO0946 0.68 -1.0 981,206 - SO0946 0.68 -0.3 981,212 - SO0946 0.69 +0.1 981,271 + SO0946 0.74 +0.1 981,276 + SO0946 0.74 -0.2 981,284 - SO0946 0.75 -0.1 981,406 - SO0946 0.86 +0.7
Or see this region's nucleotide sequence