Experiment: 36hr PHYTO10 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS31895 and BPHYT_RS31900 overlap by 26 nucleotides BPHYT_RS31900 and BPHYT_RS31905 are separated by 83 nucleotides BPHYT_RS31905 and BPHYT_RS31910 are separated by 489 nucleotides
BPHYT_RS31895: BPHYT_RS31895 - hypothetical protein, at 2,715,842 to 2,717,506
_RS31895
BPHYT_RS31900: BPHYT_RS31900 - short-chain dehydrogenase/reductase SDR, at 2,717,481 to 2,718,260
_RS31900
BPHYT_RS31905: BPHYT_RS31905 - hypothetical protein, at 2,718,344 to 2,718,865
_RS31905
BPHYT_RS31910: BPHYT_RS31910 - hypothetical protein, at 2,719,355 to 2,720,071
_RS31910
Position (kb) 2718
2719 Strain fitness (log2 ratio) -1
0
1 at 2717.526 kb on - strand at 2717.712 kb on - strand, within BPHYT_RS31900 at 2718.059 kb on + strand, within BPHYT_RS31900 at 2718.328 kb on + strand at 2718.372 kb on + strand at 2718.451 kb on - strand, within BPHYT_RS31905 at 2718.839 kb on - strand at 2718.894 kb on + strand at 2719.103 kb on - strand at 2719.351 kb on + strand at 2719.547 kb on - strand, within BPHYT_RS31910 at 2719.620 kb on - strand, within BPHYT_RS31910
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10 remove 2,717,526 - -1.5 2,717,712 - BPHYT_RS31900 0.30 -0.1 2,718,059 + BPHYT_RS31900 0.74 +0.4 2,718,328 + +0.1 2,718,372 + -0.1 2,718,451 - BPHYT_RS31905 0.20 -1.3 2,718,839 - +0.2 2,718,894 + -0.4 2,719,103 - -0.6 2,719,351 + +0.2 2,719,547 - BPHYT_RS31910 0.27 -0.1 2,719,620 - BPHYT_RS31910 0.37 -1.4
Or see this region's nucleotide sequence