Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05680

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
1,296,209	-		BPHYT_RS05675	0.20	+0.2
1,296,209	-		BPHYT_RS05675	0.20	+0.0
1,296,228	+		BPHYT_RS05675	0.22	-1.4
1,296,228	+		BPHYT_RS05675	0.22	+0.4
1,296,232	+		BPHYT_RS05675	0.23	-1.1
1,296,233	-		BPHYT_RS05675	0.23	-0.4
1,296,233	-		BPHYT_RS05675	0.23	+0.2
1,296,233	-		BPHYT_RS05675	0.23	-0.8
1,296,354	+		BPHYT_RS05675	0.35	-0.3
1,296,538	+		BPHYT_RS05675	0.53	-1.1
1,296,635	-				-0.4
1,296,635	-		BPHYT_RS05675	0.63	+3.6
1,296,750	-		BPHYT_RS05675	0.74	-1.2
1,296,816	+		BPHYT_RS05675	0.80	-0.1
1,296,925	+				-0.3
1,296,926	-				+1.1
1,297,068	+				+0.2
1,298,043	-				-0.0
1,298,043	-				-0.3
1,298,044	+				-1.4
1,298,044	+				+0.1
1,298,044	+				-2.7
1,298,045	-				+0.5
1,298,045	-				-0.1
1,298,045	-				+1.7
1,298,047	-				+1.7
1,298,047	-				-1.5
1,298,047	-				-0.4
1,298,047	-				-2.1
1,298,284	+				-0.9
1,298,284	+				-1.8
1,298,285	-				+0.2
1,298,285	-				+0.0
1,298,294	+				-0.7
1,298,298	+				+1.6
1,298,298	+				+1.0
1,298,299	-				-0.7
1,298,299	-				+0.4
1,298,424	+		BPHYT_RS05690	0.26	-0.3
1,298,743	+				+0.7
1,298,941	-				-0.4