Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05900 and BPHYT_RS05905 are separated by 488 nucleotides BPHYT_RS05905 and BPHYT_RS05910 are separated by 126 nucleotides BPHYT_RS05910 and BPHYT_RS05915 are separated by 446 nucleotides BPHYT_RS05915 and BPHYT_RS05920 are separated by 325 nucleotides
BPHYT_RS05900: BPHYT_RS05900 - hypothetical protein, at 1,340,503 to 1,340,889
_RS05900
BPHYT_RS05905: BPHYT_RS05905 - hypothetical protein, at 1,341,378 to 1,341,566
_RS05905
BPHYT_RS05910: BPHYT_RS05910 - hypothetical protein, at 1,341,693 to 1,342,115
_RS05910
BPHYT_RS05915: BPHYT_RS05915 - rubredoxin, at 1,342,562 to 1,342,753
_RS05915
BPHYT_RS05920: BPHYT_RS05920 - rod shape-determining protein RodA, at 1,343,079 to 1,343,480
_RS05920
Position (kb) 1341
1342
1343 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1340.759 kb on + strand, within BPHYT_RS05900 at 1340.759 kb on + strand, within BPHYT_RS05900 at 1340.922 kb on - strand at 1340.922 kb on - strand at 1340.954 kb on - strand at 1340.954 kb on - strand at 1340.986 kb on + strand at 1340.986 kb on + strand at 1341.046 kb on - strand at 1341.049 kb on + strand at 1341.050 kb on - strand at 1341.050 kb on - strand at 1341.111 kb on + strand at 1341.153 kb on + strand at 1341.168 kb on - strand at 1341.249 kb on + strand at 1341.250 kb on - strand at 1341.329 kb on - strand at 1341.452 kb on - strand, within BPHYT_RS05905 at 1341.484 kb on + strand, within BPHYT_RS05905 at 1341.725 kb on + strand at 1341.726 kb on - strand at 1341.755 kb on + strand, within BPHYT_RS05910 at 1341.817 kb on + strand, within BPHYT_RS05910 at 1341.817 kb on + strand, within BPHYT_RS05910 at 1341.873 kb on + strand, within BPHYT_RS05910 at 1341.929 kb on - strand, within BPHYT_RS05910 at 1342.120 kb on + strand at 1342.120 kb on + strand at 1342.121 kb on - strand at 1342.181 kb on - strand at 1342.195 kb on + strand at 1342.196 kb on - strand at 1342.415 kb on - strand at 1342.415 kb on - strand at 1342.415 kb on - strand at 1342.426 kb on + strand at 1342.528 kb on + strand at 1342.529 kb on - strand at 1342.689 kb on + strand, within BPHYT_RS05915 at 1342.689 kb on + strand, within BPHYT_RS05915 at 1342.689 kb on + strand, within BPHYT_RS05915 at 1342.690 kb on - strand, within BPHYT_RS05915 at 1342.723 kb on + strand, within BPHYT_RS05915 at 1342.724 kb on - strand, within BPHYT_RS05915 at 1342.725 kb on + strand, within BPHYT_RS05915 at 1342.726 kb on - strand, within BPHYT_RS05915 at 1342.726 kb on - strand, within BPHYT_RS05915 at 1342.726 kb on - strand, within BPHYT_RS05915 at 1342.769 kb on - strand at 1342.827 kb on + strand at 1342.878 kb on + strand at 1342.879 kb on - strand at 1342.935 kb on + strand at 1342.935 kb on + strand at 1342.936 kb on - strand at 1342.936 kb on - strand at 1342.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 1,340,759 + BPHYT_RS05900 0.66 +0.2 1,340,759 + BPHYT_RS05900 0.66 +0.8 1,340,922 - -0.9 1,340,922 - -1.6 1,340,954 - -1.0 1,340,954 - -0.0 1,340,986 + -1.2 1,340,986 + -2.0 1,341,046 - -0.2 1,341,049 + -0.9 1,341,050 - -1.3 1,341,050 - -1.0 1,341,111 + -0.0 1,341,153 + -1.4 1,341,168 - -0.1 1,341,249 + -1.5 1,341,250 - +0.4 1,341,329 - -1.1 1,341,452 - BPHYT_RS05905 0.39 +0.8 1,341,484 + BPHYT_RS05905 0.56 -0.0 1,341,725 + -0.9 1,341,726 - -0.8 1,341,755 + BPHYT_RS05910 0.15 -1.8 1,341,817 + BPHYT_RS05910 0.29 +0.3 1,341,817 + BPHYT_RS05910 0.29 -0.8 1,341,873 + BPHYT_RS05910 0.43 -1.1 1,341,929 - BPHYT_RS05910 0.56 -0.6 1,342,120 + +0.1 1,342,120 + -1.3 1,342,121 - +0.3 1,342,181 - +0.6 1,342,195 + -1.1 1,342,196 - -1.7 1,342,415 - -2.1 1,342,415 - -0.0 1,342,415 - +1.0 1,342,426 + +0.4 1,342,528 + +0.1 1,342,529 - -0.4 1,342,689 + BPHYT_RS05915 0.66 -2.1 1,342,689 + BPHYT_RS05915 0.66 +1.1 1,342,689 + BPHYT_RS05915 0.66 -0.1 1,342,690 - BPHYT_RS05915 0.67 +1.6 1,342,723 + BPHYT_RS05915 0.84 -0.5 1,342,724 - BPHYT_RS05915 0.84 -0.4 1,342,725 + BPHYT_RS05915 0.85 +1.0 1,342,726 - BPHYT_RS05915 0.85 +2.0 1,342,726 - BPHYT_RS05915 0.85 +1.1 1,342,726 - BPHYT_RS05915 0.85 -2.0 1,342,769 - +0.2 1,342,827 + +0.3 1,342,878 + +0.1 1,342,879 - +0.7 1,342,935 + +0.0 1,342,935 + +0.2 1,342,936 - +0.2 1,342,936 - +0.2 1,342,936 - -0.2
Or see this region's nucleotide sequence