Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0640 and PP_5450 are separated by 143 nucleotides PP_5450 and PP_5451 are separated by 374 nucleotides PP_5451 and PP_0641 are separated by 169 nucleotides
PP_0640: PP_0640 - conserved protein of unknown function, at 749,679 to 750,863
_0640
PP_5450: PP_5450 - exported protein of unknown function, at 751,007 to 751,606
_5450
PP_5451: PP_5451 - protein of unknown function, at 751,981 to 752,286
_5451
PP_0641: PP_0641 - conserved protein of unknown function, at 752,456 to 752,761
_0641
Position (kb) 751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 750.454 kb on - strand, within PP_0640 at 750.492 kb on - strand, within PP_0640 at 750.593 kb on + strand, within PP_0640 at 750.616 kb on + strand, within PP_0640 at 750.617 kb on - strand, within PP_0640 at 750.658 kb on - strand, within PP_0640 at 750.841 kb on + strand at 750.915 kb on + strand at 750.916 kb on - strand at 750.916 kb on - strand at 750.927 kb on + strand at 750.933 kb on - strand at 750.937 kb on + strand at 750.938 kb on - strand at 750.938 kb on - strand at 750.938 kb on - strand at 750.950 kb on + strand at 750.950 kb on + strand at 750.950 kb on + strand at 750.951 kb on - strand at 750.994 kb on + strand at 750.994 kb on + strand at 751.004 kb on + strand at 751.008 kb on + strand at 751.134 kb on + strand, within PP_5450 at 751.134 kb on + strand, within PP_5450 at 751.134 kb on + strand, within PP_5450 at 751.134 kb on + strand, within PP_5450 at 751.135 kb on - strand, within PP_5450 at 751.145 kb on + strand, within PP_5450 at 751.145 kb on + strand, within PP_5450 at 751.277 kb on - strand, within PP_5450 at 751.284 kb on - strand, within PP_5450 at 751.372 kb on + strand, within PP_5450 at 751.372 kb on + strand, within PP_5450 at 751.373 kb on - strand, within PP_5450 at 751.373 kb on - strand, within PP_5450 at 751.373 kb on - strand at 751.392 kb on - strand, within PP_5450 at 751.402 kb on + strand, within PP_5450 at 751.403 kb on - strand, within PP_5450 at 751.476 kb on - strand, within PP_5450 at 751.480 kb on - strand, within PP_5450 at 751.480 kb on - strand, within PP_5450 at 751.480 kb on - strand, within PP_5450 at 751.489 kb on - strand, within PP_5450 at 751.513 kb on + strand, within PP_5450 at 751.555 kb on + strand at 751.556 kb on - strand at 751.556 kb on - strand at 751.556 kb on - strand at 751.580 kb on + strand at 751.609 kb on - strand at 751.609 kb on - strand at 751.621 kb on + strand at 751.622 kb on - strand at 751.647 kb on + strand at 751.647 kb on + strand at 751.648 kb on - strand at 751.648 kb on - strand at 751.752 kb on - strand at 751.770 kb on + strand at 751.770 kb on + strand at 751.771 kb on - strand at 751.771 kb on - strand at 751.797 kb on - strand at 751.829 kb on + strand at 751.830 kb on - strand at 751.903 kb on - strand at 751.903 kb on - strand at 751.911 kb on + strand at 751.911 kb on + strand at 751.912 kb on - strand at 751.912 kb on - strand at 751.912 kb on - strand at 751.912 kb on - strand at 751.912 kb on - strand at 751.912 kb on - strand at 751.916 kb on - strand at 751.916 kb on - strand at 751.916 kb on - strand at 751.916 kb on - strand at 751.916 kb on - strand at 751.925 kb on - strand at 751.925 kb on - strand at 751.927 kb on + strand at 751.927 kb on + strand at 751.927 kb on + strand at 751.928 kb on - strand at 751.928 kb on - strand at 751.928 kb on - strand at 751.928 kb on - strand at 751.928 kb on - strand at 751.992 kb on - strand at 751.992 kb on - strand at 751.992 kb on - strand at 752.006 kb on + strand at 752.089 kb on + strand, within PP_5451 at 752.090 kb on - strand, within PP_5451 at 752.090 kb on - strand, within PP_5451 at 752.090 kb on - strand, within PP_5451 at 752.127 kb on - strand, within PP_5451 at 752.173 kb on + strand, within PP_5451 at 752.174 kb on - strand, within PP_5451 at 752.264 kb on + strand at 752.284 kb on + strand at 752.352 kb on - strand at 752.427 kb on + strand at 752.484 kb on + strand at 752.484 kb on + strand at 752.484 kb on + strand at 752.484 kb on + strand at 752.484 kb on + strand at 752.485 kb on - strand at 752.485 kb on - strand at 752.485 kb on - strand at 752.485 kb on - strand at 752.485 kb on - strand at 752.487 kb on + strand, within PP_0641 at 752.487 kb on + strand, within PP_0641 at 752.487 kb on + strand, within PP_0641 at 752.487 kb on + strand, within PP_0641 at 752.487 kb on + strand, within PP_0641 at 752.488 kb on - strand, within PP_0641 at 752.488 kb on - strand, within PP_0641 at 752.488 kb on - strand, within PP_0641 at 752.488 kb on - strand, within PP_0641 at 752.488 kb on - strand, within PP_0641 at 752.488 kb on - strand, within PP_0641 at 752.550 kb on + strand, within PP_0641 at 752.551 kb on - strand, within PP_0641 at 752.551 kb on - strand, within PP_0641 at 752.551 kb on - strand, within PP_0641 at 752.551 kb on - strand, within PP_0641 at 752.551 kb on - strand, within PP_0641
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 750,454 - PP_0640 0.65 -0.0 750,492 - PP_0640 0.69 -0.3 750,593 + PP_0640 0.77 -0.4 750,616 + PP_0640 0.79 -0.6 750,617 - PP_0640 0.79 -1.4 750,658 - PP_0640 0.83 +0.2 750,841 + +0.2 750,915 + +1.0 750,916 - -0.2 750,916 - -0.7 750,927 + -2.7 750,933 - -0.3 750,937 + +0.6 750,938 - -1.0 750,938 - -1.5 750,938 - +0.7 750,950 + +0.8 750,950 + -0.1 750,950 + +0.4 750,951 - +1.3 750,994 + -0.5 750,994 + +0.4 751,004 + -1.4 751,008 + +0.8 751,134 + PP_5450 0.21 -0.7 751,134 + PP_5450 0.21 -2.0 751,134 + PP_5450 0.21 +0.3 751,134 + PP_5450 0.21 -0.2 751,135 - PP_5450 0.21 -0.5 751,145 + PP_5450 0.23 -1.1 751,145 + PP_5450 0.23 +0.0 751,277 - PP_5450 0.45 -0.9 751,284 - PP_5450 0.46 -0.3 751,372 + PP_5450 0.61 -0.1 751,372 + PP_5450 0.61 -0.5 751,373 - PP_5450 0.61 -1.6 751,373 - PP_5450 0.61 +1.4 751,373 - +1.1 751,392 - PP_5450 0.64 -0.4 751,402 + PP_5450 0.66 -0.6 751,403 - PP_5450 0.66 +0.1 751,476 - PP_5450 0.78 -0.6 751,480 - PP_5450 0.79 -0.9 751,480 - PP_5450 0.79 -1.1 751,480 - PP_5450 0.79 -1.7 751,489 - PP_5450 0.80 +0.4 751,513 + PP_5450 0.84 -0.7 751,555 + -0.1 751,556 - -1.0 751,556 - +0.7 751,556 - +0.9 751,580 + -0.0 751,609 - -0.9 751,609 - -0.9 751,621 + -0.5 751,622 - -0.4 751,647 + -0.3 751,647 + +0.9 751,648 - -0.4 751,648 - -2.5 751,752 - +0.1 751,770 + -0.2 751,770 + -1.6 751,771 - +1.5 751,771 - -1.6 751,797 - -0.3 751,829 + -0.2 751,830 - -3.1 751,903 - +1.9 751,903 - +0.3 751,911 + -0.1 751,911 + +0.5 751,912 - +0.1 751,912 - +0.9 751,912 - -0.1 751,912 - -0.1 751,912 - -1.1 751,912 - -0.3 751,916 - -0.4 751,916 - +1.1 751,916 - -2.0 751,916 - +0.8 751,916 - -1.3 751,925 - -0.9 751,925 - +2.4 751,927 + +0.4 751,927 + -1.9 751,927 + +0.6 751,928 - -0.1 751,928 - +0.9 751,928 - -0.8 751,928 - -0.9 751,928 - -0.7 751,992 - +0.9 751,992 - +0.6 751,992 - -2.6 752,006 + -0.1 752,089 + PP_5451 0.35 +0.3 752,090 - PP_5451 0.36 -2.3 752,090 - PP_5451 0.36 +0.9 752,090 - PP_5451 0.36 +1.0 752,127 - PP_5451 0.48 -0.8 752,173 + PP_5451 0.63 -0.4 752,174 - PP_5451 0.63 +0.2 752,264 + -0.2 752,284 + -2.3 752,352 - -0.4 752,427 + -1.2 752,484 + +0.2 752,484 + +0.4 752,484 + +1.2 752,484 + +0.5 752,484 + +0.9 752,485 - -1.2 752,485 - -0.1 752,485 - +0.5 752,485 - +0.6 752,485 - +0.2 752,487 + PP_0641 0.10 +0.8 752,487 + PP_0641 0.10 -2.4 752,487 + PP_0641 0.10 -1.3 752,487 + PP_0641 0.10 +0.9 752,487 + PP_0641 0.10 +0.5 752,488 - PP_0641 0.10 -0.2 752,488 - PP_0641 0.10 -0.6 752,488 - PP_0641 0.10 +0.6 752,488 - PP_0641 0.10 -0.3 752,488 - PP_0641 0.10 +0.3 752,488 - PP_0641 0.10 +2.1 752,550 + PP_0641 0.31 +1.0 752,551 - PP_0641 0.31 +1.5 752,551 - PP_0641 0.31 -0.4 752,551 - PP_0641 0.31 +0.3 752,551 - PP_0641 0.31 +0.2 752,551 - PP_0641 0.31 -0.0
Or see this region's nucleotide sequence