Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05965

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
1,356,115	+		BPHYT_RS05955	0.79	-1.5
1,356,265	-				+0.1
1,356,265	-				-1.3
1,356,265	-				-0.2
1,356,334	+				-0.6
1,356,365	+				-0.1
1,356,365	+				-0.1
1,356,366	-				-0.2
1,356,366	-				+0.2
1,356,374	-				-0.9
1,356,470	+				+2.4
1,356,478	+				+1.2
1,356,479	-				-0.2
1,356,837	+		BPHYT_RS05960	0.76	-0.3
1,356,837	+		BPHYT_RS05960	0.76	-2.7
1,356,838	-		BPHYT_RS05960	0.76	+0.4
1,356,838	-		BPHYT_RS05960	0.76	-0.1
1,356,871	-		BPHYT_RS05960	0.83	-0.9
1,356,871	-		BPHYT_RS05960	0.83	-1.3
1,356,930	+				-0.5
1,356,931	-				-0.3
1,357,024	+				-0.5
1,357,284	-		BPHYT_RS05965	0.20	-1.9
1,357,284	-		BPHYT_RS05965	0.20	-0.2
1,357,299	+		BPHYT_RS05965	0.21	+1.3
1,357,300	-		BPHYT_RS05965	0.21	-1.5
1,357,341	+		BPHYT_RS05965	0.25	-1.4
1,357,492	-		BPHYT_RS05965	0.37	-0.2
1,357,492	-		BPHYT_RS05965	0.37	+0.1
1,357,722	+		BPHYT_RS05965	0.56	+1.1
1,357,723	-		BPHYT_RS05965	0.57	-0.3
1,357,815	+		BPHYT_RS05965	0.64	-1.3
1,357,815	+		BPHYT_RS05965	0.64	+7.3
1,357,845	+		BPHYT_RS05965	0.67	+0.4
1,358,025	+		BPHYT_RS05965	0.82	-1.3
1,358,316	+				-1.7
1,358,320	+				+0.5
1,358,330	+				+0.8
1,358,718	+		BPHYT_RS05970	0.57	-0.1
1,358,850	+		BPHYT_RS05970	0.76	+0.8
1,358,851	-		BPHYT_RS05970	0.76	-1.0
1,358,881	+		BPHYT_RS05970	0.81	-0.5
1,358,947	-				+0.3
1,359,107	+				+0.4
1,359,201	+				-0.4
1,359,201	+				-0.8
1,359,202	-				-0.3
1,359,211	+				-1.9
1,359,211	+				+0.0