Experiment: Phage_N4_cage_3_mouse_2_Cecum_40 hr
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaP and ybaQ are separated by 137 nucleotides ybaQ and copA are separated by 315 nucleotides copA and ybaS are separated by 261 nucleotides
b0482: ybaP - hypothetical protein (NCBI), at 506,510 to 507,304
ybaP
b0483: ybaQ - orf, hypothetical protein (VIMSS), at 507,442 to 507,783
ybaQ
b0484: copA - copper transporter (NCBI), at 508,099 to 510,603
copA
b0485: ybaS - predicted glutaminase (NCBI), at 510,865 to 511,797
ybaS
Position (kb) 508
509
510
511 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 507.170 kb on - strand, within ybaP at 507.254 kb on - strand at 507.573 kb on + strand, within ybaQ at 507.573 kb on + strand, within ybaQ at 507.576 kb on - strand, within ybaQ at 507.576 kb on - strand, within ybaQ at 507.581 kb on - strand, within ybaQ at 507.604 kb on - strand, within ybaQ at 507.720 kb on - strand, within ybaQ at 507.723 kb on + strand, within ybaQ at 507.731 kb on - strand, within ybaQ at 507.731 kb on - strand, within ybaQ at 507.752 kb on + strand at 507.752 kb on + strand at 507.760 kb on - strand at 507.760 kb on - strand at 508.029 kb on - strand at 508.043 kb on + strand at 508.098 kb on - strand at 508.098 kb on - strand at 508.141 kb on - strand at 508.148 kb on - strand at 508.189 kb on + strand at 508.189 kb on + strand at 508.412 kb on + strand, within copA at 508.433 kb on + strand, within copA at 508.452 kb on + strand, within copA at 508.452 kb on + strand, within copA at 508.475 kb on - strand, within copA at 508.585 kb on + strand, within copA at 508.585 kb on + strand, within copA at 508.601 kb on - strand, within copA at 508.608 kb on - strand at 508.646 kb on - strand, within copA at 508.646 kb on - strand, within copA at 508.704 kb on + strand, within copA at 508.783 kb on - strand, within copA at 508.878 kb on - strand, within copA at 508.922 kb on + strand, within copA at 508.932 kb on + strand, within copA at 509.001 kb on + strand, within copA at 509.001 kb on + strand, within copA at 509.043 kb on + strand, within copA at 509.043 kb on + strand, within copA at 509.048 kb on - strand, within copA at 509.048 kb on - strand, within copA at 509.051 kb on - strand, within copA at 509.051 kb on - strand, within copA at 509.051 kb on - strand, within copA at 509.057 kb on + strand, within copA at 509.152 kb on + strand, within copA at 509.184 kb on - strand, within copA at 509.249 kb on + strand, within copA at 509.401 kb on + strand, within copA at 509.404 kb on - strand, within copA at 509.416 kb on + strand, within copA at 509.416 kb on + strand, within copA at 509.416 kb on + strand, within copA at 509.427 kb on - strand, within copA at 509.427 kb on - strand, within copA at 509.429 kb on + strand, within copA at 509.560 kb on - strand, within copA at 509.563 kb on + strand, within copA at 509.640 kb on + strand, within copA at 509.682 kb on + strand, within copA at 509.702 kb on - strand, within copA at 509.702 kb on - strand, within copA at 509.708 kb on - strand, within copA at 509.812 kb on - strand, within copA at 509.830 kb on - strand, within copA at 509.841 kb on + strand, within copA at 509.841 kb on + strand, within copA at 509.929 kb on + strand, within copA at 509.935 kb on + strand, within copA at 510.004 kb on - strand, within copA at 510.019 kb on + strand, within copA at 510.186 kb on + strand, within copA at 510.217 kb on - strand, within copA at 510.217 kb on - strand, within copA at 510.264 kb on - strand, within copA at 510.266 kb on + strand, within copA at 510.272 kb on + strand, within copA at 510.277 kb on + strand, within copA at 510.453 kb on + strand at 510.461 kb on - strand at 510.461 kb on - strand at 510.488 kb on + strand at 510.515 kb on - strand at 510.523 kb on - strand at 510.525 kb on + strand at 510.525 kb on + strand at 510.587 kb on - strand at 510.631 kb on - strand at 510.651 kb on - strand at 510.652 kb on - strand at 510.844 kb on + strand at 510.903 kb on + strand at 510.903 kb on + strand at 510.979 kb on - strand, within ybaS at 510.979 kb on - strand, within ybaS at 511.000 kb on - strand, within ybaS at 511.172 kb on + strand, within ybaS at 511.172 kb on + strand, within ybaS at 511.359 kb on + strand, within ybaS at 511.389 kb on - strand, within ybaS at 511.392 kb on - strand, within ybaS at 511.434 kb on + strand, within ybaS at 511.583 kb on + strand, within ybaS at 511.583 kb on + strand, within ybaS
Per-strain Table
Position Strand Gene LocusTag Fraction Phage_N4_cage_3_mouse_2_Cecum_40 hr remove 507,170 - ybaP b0482 0.83 -0.1 507,254 - -0.3 507,573 + ybaQ b0483 0.38 +0.1 507,573 + ybaQ b0483 0.38 +0.2 507,576 - ybaQ b0483 0.39 +0.7 507,576 - ybaQ b0483 0.39 +0.2 507,581 - ybaQ b0483 0.41 -0.1 507,604 - ybaQ b0483 0.47 +0.1 507,720 - ybaQ b0483 0.81 -0.1 507,723 + ybaQ b0483 0.82 +0.3 507,731 - ybaQ b0483 0.85 +0.1 507,731 - ybaQ b0483 0.85 -1.9 507,752 + +0.2 507,752 + +0.5 507,760 - +1.0 507,760 - -0.4 508,029 - +0.1 508,043 + -0.5 508,098 - -0.1 508,098 - -0.2 508,141 - -1.6 508,148 - -1.6 508,189 + -0.7 508,189 + -1.5 508,412 + copA b0484 0.12 -1.8 508,433 + copA b0484 0.13 -1.4 508,452 + copA b0484 0.14 -1.7 508,452 + copA b0484 0.14 -0.8 508,475 - copA b0484 0.15 -2.0 508,585 + copA b0484 0.19 -4.2 508,585 + copA b0484 0.19 -2.5 508,601 - copA b0484 0.20 +0.1 508,608 - -2.6 508,646 - copA b0484 0.22 -1.9 508,646 - copA b0484 0.22 +0.2 508,704 + copA b0484 0.24 -1.5 508,783 - copA b0484 0.27 -2.7 508,878 - copA b0484 0.31 -1.6 508,922 + copA b0484 0.33 -2.0 508,932 + copA b0484 0.33 -2.7 509,001 + copA b0484 0.36 -0.5 509,001 + copA b0484 0.36 -2.0 509,043 + copA b0484 0.38 -0.8 509,043 + copA b0484 0.38 -0.2 509,048 - copA b0484 0.38 -0.9 509,048 - copA b0484 0.38 -1.6 509,051 - copA b0484 0.38 -0.6 509,051 - copA b0484 0.38 -4.5 509,051 - copA b0484 0.38 -0.9 509,057 + copA b0484 0.38 -0.4 509,152 + copA b0484 0.42 -1.6 509,184 - copA b0484 0.43 -0.9 509,249 + copA b0484 0.46 +0.0 509,401 + copA b0484 0.52 -0.9 509,404 - copA b0484 0.52 -1.2 509,416 + copA b0484 0.53 -2.4 509,416 + copA b0484 0.53 -1.9 509,416 + copA b0484 0.53 -1.9 509,427 - copA b0484 0.53 -0.3 509,427 - copA b0484 0.53 -1.1 509,429 + copA b0484 0.53 -0.7 509,560 - copA b0484 0.58 -2.5 509,563 + copA b0484 0.58 -1.8 509,640 + copA b0484 0.62 -1.8 509,682 + copA b0484 0.63 -1.3 509,702 - copA b0484 0.64 -2.0 509,702 - copA b0484 0.64 -0.0 509,708 - copA b0484 0.64 -3.1 509,812 - copA b0484 0.68 -0.5 509,830 - copA b0484 0.69 -1.0 509,841 + copA b0484 0.70 -0.9 509,841 + copA b0484 0.70 -1.2 509,929 + copA b0484 0.73 -1.1 509,935 + copA b0484 0.73 +0.4 510,004 - copA b0484 0.76 -0.9 510,019 + copA b0484 0.77 -1.8 510,186 + copA b0484 0.83 -1.1 510,217 - copA b0484 0.85 -1.1 510,217 - copA b0484 0.85 -2.7 510,264 - copA b0484 0.86 -2.1 510,266 + copA b0484 0.87 -0.7 510,272 + copA b0484 0.87 -1.5 510,277 + copA b0484 0.87 -1.1 510,453 + -1.0 510,461 - -2.6 510,461 - -3.9 510,488 + -0.5 510,515 - -1.9 510,523 - -1.8 510,525 + -2.6 510,525 + -0.9 510,587 - -0.6 510,631 - -0.0 510,651 - -0.2 510,652 - -0.8 510,844 + +0.3 510,903 + +0.4 510,903 + -0.2 510,979 - ybaS b0485 0.12 -0.1 510,979 - ybaS b0485 0.12 -0.5 511,000 - ybaS b0485 0.14 -3.3 511,172 + ybaS b0485 0.33 -0.9 511,172 + ybaS b0485 0.33 -0.2 511,359 + ybaS b0485 0.53 -0.6 511,389 - ybaS b0485 0.56 -0.6 511,392 - ybaS b0485 0.56 +0.2 511,434 + ybaS b0485 0.61 -0.4 511,583 + ybaS b0485 0.77 +0.1 511,583 + ybaS b0485 0.77 -0.2
Or see this region's nucleotide sequence