Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27320

Experiment: K. M5a1 KLEB26 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS27315 and BWI76_RS27320 overlap by 1 nucleotidesBWI76_RS27320 and BWI76_RS27325 overlap by 4 nucleotidesBWI76_RS27325 and BWI76_RS27330 are separated by 100 nucleotides BWI76_RS27315: BWI76_RS27315 - 3-deoxy-D-manno-octulosonic acid transferase, at 5,669,571 to 5,670,845 _RS27315 BWI76_RS27320: BWI76_RS27320 - glucosyl transferase, at 5,670,845 to 5,671,621 _RS27320 BWI76_RS27325: BWI76_RS27325 - pantetheine-phosphate adenylyltransferase, at 5,671,618 to 5,672,094 _RS27325 BWI76_RS27330: BWI76_RS27330 - DNA-formamidopyrimidine glycosylase, at 5,672,195 to 5,673,004 _RS27330 Position (kb) 5670 5671 5672Strain fitness (log2 ratio) -3 -2 -1 0 1at 5672.233 kb on + strandat 5672.241 kb on - strandat 5672.371 kb on + strand, within BWI76_RS27330at 5672.540 kb on - strand, within BWI76_RS27330at 5672.586 kb on + strand, within BWI76_RS27330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
remove
5,672,233 + -1.9
5,672,241 - -0.0
5,672,371 + BWI76_RS27330 0.22 +0.4
5,672,540 - BWI76_RS27330 0.43 -0.2
5,672,586 + BWI76_RS27330 0.48 -3.5

Or see this region's nucleotide sequence