Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00940

Experiment: KLEB31 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00920 and BWI76_RS00925 are separated by 54 nucleotidesBWI76_RS00925 and BWI76_RS00930 are separated by 55 nucleotidesBWI76_RS00930 and BWI76_RS00935 are separated by 54 nucleotidesBWI76_RS00935 and BWI76_RS00940 are separated by 82 nucleotidesBWI76_RS00940 and BWI76_RS00945 are separated by 118 nucleotidesBWI76_RS00945 and BWI76_RS00950 are separated by 23 nucleotides BWI76_RS00920: BWI76_RS00920 - 23S ribosomal RNA, at 188,536 to 191,462 _RS00920 BWI76_RS00925: BWI76_RS00925 - 5S ribosomal RNA, at 191,517 to 191,632 _RS00925 BWI76_RS00930: BWI76_RS00930 - tRNA-Asp, at 191,688 to 191,764 _RS00930 BWI76_RS00935: BWI76_RS00935 - tRNA-Trp, at 191,819 to 191,894 _RS00935 BWI76_RS00940: BWI76_RS00940 - transcriptional regulator HdfR, at 191,977 to 192,798 _RS00940 BWI76_RS00945: BWI76_RS00945 - hypothetical protein, at 192,917 to 193,255 _RS00945 BWI76_RS00950: BWI76_RS00950 - ATP-dependent protease, at 193,279 to 194,799 _RS00950 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 192.066 kb on + strand, within BWI76_RS00940at 192.123 kb on - strand, within BWI76_RS00940at 192.126 kb on + strand, within BWI76_RS00940at 192.126 kb on + strand, within BWI76_RS00940at 192.131 kb on + strand, within BWI76_RS00940at 192.136 kb on + strand, within BWI76_RS00940at 192.138 kb on + strand, within BWI76_RS00940at 192.263 kb on - strand, within BWI76_RS00940at 192.413 kb on + strand, within BWI76_RS00940at 192.461 kb on + strand, within BWI76_RS00940at 192.461 kb on + strand, within BWI76_RS00940at 192.620 kb on + strand, within BWI76_RS00940at 192.773 kb on - strandat 192.853 kb on + strandat 192.863 kb on - strandat 192.866 kb on + strandat 192.928 kb on - strandat 193.018 kb on + strand, within BWI76_RS00945at 193.602 kb on - strand, within BWI76_RS00950at 193.745 kb on - strand, within BWI76_RS00950

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB31 MOI 1
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192,066 + BWI76_RS00940 0.11 +0.4
192,123 - BWI76_RS00940 0.18 +1.2
192,126 + BWI76_RS00940 0.18 +3.0
192,126 + BWI76_RS00940 0.18 +1.4
192,131 + BWI76_RS00940 0.19 +0.5
192,136 + BWI76_RS00940 0.19 +1.1
192,138 + BWI76_RS00940 0.20 -0.7
192,263 - BWI76_RS00940 0.35 +2.2
192,413 + BWI76_RS00940 0.53 -0.9
192,461 + BWI76_RS00940 0.59 +1.8
192,461 + BWI76_RS00940 0.59 +1.1
192,620 + BWI76_RS00940 0.78 +0.6
192,773 - +0.9
192,853 + +0.9
192,863 - +1.8
192,866 + -2.3
192,928 - +4.4
193,018 + BWI76_RS00945 0.30 +0.6
193,602 - BWI76_RS00950 0.21 +0.7
193,745 - BWI76_RS00950 0.31 +0.1

Or see this region's nucleotide sequence