Experiment: Fraxetin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20435 and PS417_20440 are separated by 692 nucleotides PS417_20440 and PS417_20445 are separated by 140 nucleotides PS417_20445 and PS417_20450 are separated by 9 nucleotides
PS417_20435: PS417_20435 - membrane protein, at 4,433,818 to 4,437,363
_20435
PS417_20440: PS417_20440 - integrase, at 4,438,056 to 4,439,441
_20440
PS417_20445: PS417_20445 - hypothetical protein, at 4,439,582 to 4,440,427
_20445
PS417_20450: PS417_20450 - hypothetical protein, at 4,440,437 to 4,441,369
_20450
Position (kb)
4438
4439
4440 Strain fitness (log2 ratio)
-2
-1
0
1 at 4437.151 kb on + strand at 4437.371 kb on + strand at 4437.465 kb on + strand at 4437.600 kb on + strand at 4437.600 kb on + strand at 4437.619 kb on - strand at 4437.776 kb on - strand at 4437.844 kb on + strand at 4437.845 kb on - strand at 4437.845 kb on - strand at 4438.038 kb on - strand at 4438.181 kb on + strand at 4438.415 kb on - strand, within PS417_20440 at 4438.544 kb on + strand, within PS417_20440 at 4438.674 kb on - strand, within PS417_20440 at 4438.686 kb on + strand, within PS417_20440 at 4438.707 kb on - strand, within PS417_20440 at 4438.797 kb on + strand, within PS417_20440 at 4438.797 kb on + strand, within PS417_20440 at 4438.908 kb on - strand, within PS417_20440 at 4438.975 kb on + strand, within PS417_20440 at 4439.177 kb on - strand, within PS417_20440 at 4439.181 kb on + strand, within PS417_20440 at 4439.213 kb on + strand, within PS417_20440 at 4439.410 kb on + strand at 4439.444 kb on + strand at 4439.468 kb on + strand at 4439.507 kb on + strand at 4439.547 kb on + strand at 4439.547 kb on + strand at 4439.679 kb on + strand, within PS417_20445 at 4439.697 kb on + strand, within PS417_20445 at 4439.697 kb on + strand, within PS417_20445 at 4439.727 kb on + strand, within PS417_20445 at 4439.767 kb on - strand, within PS417_20445 at 4439.869 kb on + strand, within PS417_20445 at 4439.869 kb on + strand, within PS417_20445 at 4439.962 kb on + strand, within PS417_20445 at 4439.964 kb on + strand, within PS417_20445 at 4439.964 kb on + strand, within PS417_20445 at 4439.964 kb on + strand, within PS417_20445 at 4439.964 kb on + strand, within PS417_20445 at 4439.965 kb on - strand, within PS417_20445 at 4439.965 kb on - strand, within PS417_20445 at 4439.965 kb on - strand, within PS417_20445 at 4440.000 kb on - strand, within PS417_20445 at 4440.086 kb on + strand, within PS417_20445 at 4440.086 kb on + strand, within PS417_20445 at 4440.087 kb on - strand, within PS417_20445 at 4440.087 kb on - strand, within PS417_20445 at 4440.201 kb on + strand, within PS417_20445 at 4440.202 kb on - strand, within PS417_20445 at 4440.202 kb on - strand, within PS417_20445
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress remove 4,437,151 + -0.1 4,437,371 + -0.1 4,437,465 + -0.0 4,437,600 + -0.4 4,437,600 + +0.9 4,437,619 - +0.7 4,437,776 - +0.4 4,437,844 + +0.5 4,437,845 - +0.1 4,437,845 - +0.3 4,438,038 - -0.3 4,438,181 + +0.0 4,438,415 - PS417_20440 0.26 -0.1 4,438,544 + PS417_20440 0.35 +0.2 4,438,674 - PS417_20440 0.45 +0.1 4,438,686 + PS417_20440 0.45 +1.1 4,438,707 - PS417_20440 0.47 -0.1 4,438,797 + PS417_20440 0.53 +1.2 4,438,797 + PS417_20440 0.53 +0.2 4,438,908 - PS417_20440 0.61 +0.6 4,438,975 + PS417_20440 0.66 +0.3 4,439,177 - PS417_20440 0.81 -0.2 4,439,181 + PS417_20440 0.81 +0.3 4,439,213 + PS417_20440 0.83 +0.1 4,439,410 + -0.1 4,439,444 + -0.4 4,439,468 + +0.1 4,439,507 + -1.2 4,439,547 + -0.3 4,439,547 + +0.1 4,439,679 + PS417_20445 0.11 -0.5 4,439,697 + PS417_20445 0.14 -0.5 4,439,697 + PS417_20445 0.14 -0.1 4,439,727 + PS417_20445 0.17 -0.3 4,439,767 - PS417_20445 0.22 +0.0 4,439,869 + PS417_20445 0.34 -0.2 4,439,869 + PS417_20445 0.34 +0.0 4,439,962 + PS417_20445 0.45 -0.1 4,439,964 + PS417_20445 0.45 -2.0 4,439,964 + PS417_20445 0.45 -0.6 4,439,964 + PS417_20445 0.45 +0.0 4,439,964 + PS417_20445 0.45 +0.7 4,439,965 - PS417_20445 0.45 +0.1 4,439,965 - PS417_20445 0.45 +0.1 4,439,965 - PS417_20445 0.45 -0.2 4,440,000 - PS417_20445 0.49 -0.2 4,440,086 + PS417_20445 0.60 +0.6 4,440,086 + PS417_20445 0.60 -0.0 4,440,087 - PS417_20445 0.60 -0.3 4,440,087 - PS417_20445 0.60 +0.2 4,440,201 + PS417_20445 0.73 -0.4 4,440,202 - PS417_20445 0.73 +0.4 4,440,202 - PS417_20445 0.73 +0.3
Or see this region's nucleotide sequence