Strain Fitness in Pseudomonas simiae WCS417 around PS417_20440

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20435 and PS417_20440 are separated by 692 nucleotidesPS417_20440 and PS417_20445 are separated by 140 nucleotidesPS417_20445 and PS417_20450 are separated by 9 nucleotides PS417_20435: PS417_20435 - membrane protein, at 4,433,818 to 4,437,363 _20435 PS417_20440: PS417_20440 - integrase, at 4,438,056 to 4,439,441 _20440 PS417_20445: PS417_20445 - hypothetical protein, at 4,439,582 to 4,440,427 _20445 PS417_20450: PS417_20450 - hypothetical protein, at 4,440,437 to 4,441,369 _20450 Position (kb) 4438 4439 4440Strain fitness (log2 ratio) -2 -1 0 1at 4437.151 kb on + strandat 4437.371 kb on + strandat 4437.465 kb on + strandat 4437.600 kb on + strandat 4437.600 kb on + strandat 4437.619 kb on - strandat 4437.776 kb on - strandat 4437.844 kb on + strandat 4437.845 kb on - strandat 4437.845 kb on - strandat 4438.038 kb on - strandat 4438.181 kb on + strandat 4438.415 kb on - strand, within PS417_20440at 4438.544 kb on + strand, within PS417_20440at 4438.674 kb on - strand, within PS417_20440at 4438.686 kb on + strand, within PS417_20440at 4438.707 kb on - strand, within PS417_20440at 4438.797 kb on + strand, within PS417_20440at 4438.797 kb on + strand, within PS417_20440at 4438.908 kb on - strand, within PS417_20440at 4438.975 kb on + strand, within PS417_20440at 4439.177 kb on - strand, within PS417_20440at 4439.181 kb on + strand, within PS417_20440at 4439.213 kb on + strand, within PS417_20440at 4439.410 kb on + strandat 4439.444 kb on + strandat 4439.468 kb on + strandat 4439.507 kb on + strandat 4439.547 kb on + strandat 4439.547 kb on + strandat 4439.679 kb on + strand, within PS417_20445at 4439.697 kb on + strand, within PS417_20445at 4439.697 kb on + strand, within PS417_20445at 4439.727 kb on + strand, within PS417_20445at 4439.767 kb on - strand, within PS417_20445at 4439.869 kb on + strand, within PS417_20445at 4439.869 kb on + strand, within PS417_20445at 4439.962 kb on + strand, within PS417_20445at 4439.964 kb on + strand, within PS417_20445at 4439.964 kb on + strand, within PS417_20445at 4439.964 kb on + strand, within PS417_20445at 4439.964 kb on + strand, within PS417_20445at 4439.965 kb on - strand, within PS417_20445at 4439.965 kb on - strand, within PS417_20445at 4439.965 kb on - strand, within PS417_20445at 4440.000 kb on - strand, within PS417_20445at 4440.086 kb on + strand, within PS417_20445at 4440.086 kb on + strand, within PS417_20445at 4440.087 kb on - strand, within PS417_20445at 4440.087 kb on - strand, within PS417_20445at 4440.201 kb on + strand, within PS417_20445at 4440.202 kb on - strand, within PS417_20445at 4440.202 kb on - strand, within PS417_20445

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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4,437,151 + -0.1
4,437,371 + -0.1
4,437,465 + -0.0
4,437,600 + -0.4
4,437,600 + +0.9
4,437,619 - +0.7
4,437,776 - +0.4
4,437,844 + +0.5
4,437,845 - +0.1
4,437,845 - +0.3
4,438,038 - -0.3
4,438,181 + +0.0
4,438,415 - PS417_20440 0.26 -0.1
4,438,544 + PS417_20440 0.35 +0.2
4,438,674 - PS417_20440 0.45 +0.1
4,438,686 + PS417_20440 0.45 +1.1
4,438,707 - PS417_20440 0.47 -0.1
4,438,797 + PS417_20440 0.53 +1.2
4,438,797 + PS417_20440 0.53 +0.2
4,438,908 - PS417_20440 0.61 +0.6
4,438,975 + PS417_20440 0.66 +0.3
4,439,177 - PS417_20440 0.81 -0.2
4,439,181 + PS417_20440 0.81 +0.3
4,439,213 + PS417_20440 0.83 +0.1
4,439,410 + -0.1
4,439,444 + -0.4
4,439,468 + +0.1
4,439,507 + -1.2
4,439,547 + -0.3
4,439,547 + +0.1
4,439,679 + PS417_20445 0.11 -0.5
4,439,697 + PS417_20445 0.14 -0.5
4,439,697 + PS417_20445 0.14 -0.1
4,439,727 + PS417_20445 0.17 -0.3
4,439,767 - PS417_20445 0.22 +0.0
4,439,869 + PS417_20445 0.34 -0.2
4,439,869 + PS417_20445 0.34 +0.0
4,439,962 + PS417_20445 0.45 -0.1
4,439,964 + PS417_20445 0.45 -2.0
4,439,964 + PS417_20445 0.45 -0.6
4,439,964 + PS417_20445 0.45 +0.0
4,439,964 + PS417_20445 0.45 +0.7
4,439,965 - PS417_20445 0.45 +0.1
4,439,965 - PS417_20445 0.45 +0.1
4,439,965 - PS417_20445 0.45 -0.2
4,440,000 - PS417_20445 0.49 -0.2
4,440,086 + PS417_20445 0.60 +0.6
4,440,086 + PS417_20445 0.60 -0.0
4,440,087 - PS417_20445 0.60 -0.3
4,440,087 - PS417_20445 0.60 +0.2
4,440,201 + PS417_20445 0.73 -0.4
4,440,202 - PS417_20445 0.73 +0.4
4,440,202 - PS417_20445 0.73 +0.3

Or see this region's nucleotide sequence