Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22895

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22890 and BWI76_RS22895 are separated by 73 nucleotidesBWI76_RS22895 and BWI76_RS22900 are separated by 41 nucleotides BWI76_RS22890: BWI76_RS22890 - 5,10-methylenetetrahydromethanopterin reductase, at 4,776,743 to 4,778,149 _RS22890 BWI76_RS22895: BWI76_RS22895 - FAD-dependent oxidoreductase, at 4,778,223 to 4,779,620 _RS22895 BWI76_RS22900: BWI76_RS22900 - alkanesulfonate monooxygenase, at 4,779,662 to 4,780,834 _RS22900 Position (kb) 4778 4779 4780Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4777.243 kb on - strand, within BWI76_RS22890at 4777.487 kb on - strand, within BWI76_RS22890at 4777.569 kb on + strand, within BWI76_RS22890at 4777.974 kb on + strand, within BWI76_RS22890at 4778.050 kb on + strandat 4778.081 kb on - strandat 4778.081 kb on - strandat 4778.154 kb on - strandat 4778.154 kb on - strandat 4778.257 kb on - strandat 4778.644 kb on + strand, within BWI76_RS22895at 4778.658 kb on - strand, within BWI76_RS22895at 4778.715 kb on - strand, within BWI76_RS22895at 4778.925 kb on - strand, within BWI76_RS22895at 4778.925 kb on - strand, within BWI76_RS22895at 4778.985 kb on - strand, within BWI76_RS22895at 4779.074 kb on - strand, within BWI76_RS22895at 4779.079 kb on + strand, within BWI76_RS22895at 4779.410 kb on + strand, within BWI76_RS22895at 4779.446 kb on + strand, within BWI76_RS22895at 4779.934 kb on - strand, within BWI76_RS22900at 4779.940 kb on - strand, within BWI76_RS22900at 4780.062 kb on + strand, within BWI76_RS22900at 4780.229 kb on + strand, within BWI76_RS22900at 4780.237 kb on - strand, within BWI76_RS22900at 4780.247 kb on - strand, within BWI76_RS22900at 4780.262 kb on + strand, within BWI76_RS22900at 4780.305 kb on + strand, within BWI76_RS22900

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,777,243 - BWI76_RS22890 0.36 -0.2
4,777,487 - BWI76_RS22890 0.53 +0.4
4,777,569 + BWI76_RS22890 0.59 -1.1
4,777,974 + BWI76_RS22890 0.87 -0.5
4,778,050 + +0.2
4,778,081 - +0.0
4,778,081 - -0.7
4,778,154 - +0.5
4,778,154 - +0.6
4,778,257 - +0.5
4,778,644 + BWI76_RS22895 0.30 +2.8
4,778,658 - BWI76_RS22895 0.31 -0.1
4,778,715 - BWI76_RS22895 0.35 +0.0
4,778,925 - BWI76_RS22895 0.50 +6.7
4,778,925 - BWI76_RS22895 0.50 -1.1
4,778,985 - BWI76_RS22895 0.55 -1.1
4,779,074 - BWI76_RS22895 0.61 +0.3
4,779,079 + BWI76_RS22895 0.61 -0.2
4,779,410 + BWI76_RS22895 0.85 +0.2
4,779,446 + BWI76_RS22895 0.87 -0.6
4,779,934 - BWI76_RS22900 0.23 +0.7
4,779,940 - BWI76_RS22900 0.24 -0.3
4,780,062 + BWI76_RS22900 0.34 -0.4
4,780,229 + BWI76_RS22900 0.48 +0.1
4,780,237 - BWI76_RS22900 0.49 +0.8
4,780,247 - BWI76_RS22900 0.50 -1.0
4,780,262 + BWI76_RS22900 0.51 -2.5
4,780,305 + BWI76_RS22900 0.55 -1.1

Or see this region's nucleotide sequence