Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16845

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16835 and BWI76_RS16840 are separated by 195 nucleotidesBWI76_RS16840 and BWI76_RS16845 overlap by 7 nucleotidesBWI76_RS16845 and BWI76_RS16850 overlap by 20 nucleotides BWI76_RS16835: BWI76_RS16835 - TonB-dependent siderophore receptor, at 3,490,225 to 3,492,378 _RS16835 BWI76_RS16840: BWI76_RS16840 - ABC transporter, at 3,492,574 to 3,493,362 _RS16840 BWI76_RS16845: BWI76_RS16845 - ABC transporter permease, at 3,493,356 to 3,494,351 _RS16845 BWI76_RS16850: BWI76_RS16850 - ABC transporter periplasmic substrate-binding protein, at 3,494,332 to 3,495,369 _RS16850 Position (kb) 3493 3494 3495Strain fitness (log2 ratio) -1 0 1 2at 3492.470 kb on + strandat 3492.531 kb on + strandat 3492.735 kb on - strand, within BWI76_RS16840at 3492.765 kb on + strand, within BWI76_RS16840at 3493.165 kb on - strand, within BWI76_RS16840at 3493.403 kb on + strandat 3493.432 kb on - strandat 3493.441 kb on + strandat 3493.480 kb on + strand, within BWI76_RS16845at 3493.493 kb on - strand, within BWI76_RS16845at 3493.651 kb on - strand, within BWI76_RS16845at 3493.715 kb on - strand, within BWI76_RS16845at 3493.903 kb on - strand, within BWI76_RS16845at 3493.919 kb on + strand, within BWI76_RS16845at 3494.251 kb on + strand, within BWI76_RS16845at 3494.575 kb on - strand, within BWI76_RS16850at 3494.662 kb on + strand, within BWI76_RS16850at 3494.662 kb on + strand, within BWI76_RS16850at 3495.015 kb on + strand, within BWI76_RS16850

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,492,470 + -1.3
3,492,531 + +1.4
3,492,735 - BWI76_RS16840 0.20 -0.5
3,492,765 + BWI76_RS16840 0.24 -0.2
3,493,165 - BWI76_RS16840 0.75 +0.8
3,493,403 + +1.8
3,493,432 - -0.8
3,493,441 + -0.3
3,493,480 + BWI76_RS16845 0.12 +0.1
3,493,493 - BWI76_RS16845 0.14 -1.1
3,493,651 - BWI76_RS16845 0.30 +0.0
3,493,715 - BWI76_RS16845 0.36 -0.8
3,493,903 - BWI76_RS16845 0.55 -0.6
3,493,919 + BWI76_RS16845 0.57 +0.2
3,494,251 + BWI76_RS16845 0.90 +0.6
3,494,575 - BWI76_RS16850 0.23 -0.3
3,494,662 + BWI76_RS16850 0.32 +1.3
3,494,662 + BWI76_RS16850 0.32 -0.9
3,495,015 + BWI76_RS16850 0.66 +0.8

Or see this region's nucleotide sequence