Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18195 and BWI76_RS18200 are separated by 100 nucleotides BWI76_RS18200 and BWI76_RS18205 are separated by 76 nucleotides BWI76_RS18205 and BWI76_RS18210 are separated by 230 nucleotides
BWI76_RS18195: BWI76_RS18195 - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 3,779,561 to 3,780,577
_RS18195
BWI76_RS18200: BWI76_RS18200 - copper homeostasis protein CutC, at 3,780,678 to 3,781,412
_RS18200
BWI76_RS18205: BWI76_RS18205 - VOC family protein, at 3,781,489 to 3,782,058
_RS18205
BWI76_RS18210: BWI76_RS18210 - arginine--tRNA ligase, at 3,782,289 to 3,784,022
_RS18210
Position (kb)
3780
3781
3782 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3779.775 kb on + strand, within BWI76_RS18195 at 3779.814 kb on + strand, within BWI76_RS18195 at 3780.107 kb on - strand, within BWI76_RS18195 at 3780.317 kb on - strand, within BWI76_RS18195 at 3780.878 kb on + strand, within BWI76_RS18200 at 3780.878 kb on + strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3780.886 kb on - strand, within BWI76_RS18200 at 3781.070 kb on - strand, within BWI76_RS18200 at 3781.327 kb on + strand, within BWI76_RS18200 at 3781.875 kb on + strand, within BWI76_RS18205 at 3782.146 kb on + strand at 3782.184 kb on - strand at 3782.196 kb on - strand at 3782.211 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 3,779,775 + BWI76_RS18195 0.21 -0.0 3,779,814 + BWI76_RS18195 0.25 +0.4 3,780,107 - BWI76_RS18195 0.54 +0.2 3,780,317 - BWI76_RS18195 0.74 -0.3 3,780,878 + BWI76_RS18200 0.27 -3.1 3,780,878 + BWI76_RS18200 0.27 -2.6 3,780,886 - BWI76_RS18200 0.28 -1.8 3,780,886 - BWI76_RS18200 0.28 -1.2 3,780,886 - BWI76_RS18200 0.28 -1.5 3,780,886 - BWI76_RS18200 0.28 -1.3 3,780,886 - BWI76_RS18200 0.28 -1.7 3,780,886 - BWI76_RS18200 0.28 -0.3 3,781,070 - BWI76_RS18200 0.53 -0.1 3,781,327 + BWI76_RS18200 0.88 -0.2 3,781,875 + BWI76_RS18205 0.68 +1.0 3,782,146 + -0.2 3,782,184 - -0.2 3,782,196 - +0.3 3,782,211 + -0.3
Or see this region's nucleotide sequence