Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16685

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16680 and BWI76_RS16685 are separated by 42 nucleotidesBWI76_RS16685 and BWI76_RS16690 overlap by 1 nucleotidesBWI76_RS16690 and BWI76_RS16695 overlap by 4 nucleotides BWI76_RS16680: BWI76_RS16680 - ABC transporter substrate-binding protein, at 3,451,896 to 3,453,599 _RS16680 BWI76_RS16685: BWI76_RS16685 - peptide ABC transporter permease, at 3,453,642 to 3,454,601 _RS16685 BWI76_RS16690: BWI76_RS16690 - peptide ABC transporter permease, at 3,454,601 to 3,455,548 _RS16690 BWI76_RS16695: BWI76_RS16695 - dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein, at 3,455,545 to 3,456,525 _RS16695 Position (kb) 3453 3454 3455Strain fitness (log2 ratio) -1 0 1at 3452.687 kb on + strand, within BWI76_RS16680at 3452.963 kb on + strand, within BWI76_RS16680at 3453.141 kb on - strand, within BWI76_RS16680at 3453.176 kb on + strand, within BWI76_RS16680at 3453.767 kb on - strand, within BWI76_RS16685at 3454.365 kb on - strand, within BWI76_RS16685at 3454.377 kb on - strandat 3454.628 kb on - strandat 3454.952 kb on - strand, within BWI76_RS16690at 3455.202 kb on + strand, within BWI76_RS16690at 3455.311 kb on + strand, within BWI76_RS16690

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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3,452,687 + BWI76_RS16680 0.46 +0.5
3,452,963 + BWI76_RS16680 0.63 -0.8
3,453,141 - BWI76_RS16680 0.73 -0.4
3,453,176 + BWI76_RS16680 0.75 -0.0
3,453,767 - BWI76_RS16685 0.13 +0.4
3,454,365 - BWI76_RS16685 0.75 +0.4
3,454,377 - -0.4
3,454,628 - +0.1
3,454,952 - BWI76_RS16690 0.37 -0.4
3,455,202 + BWI76_RS16690 0.63 +0.4
3,455,311 + BWI76_RS16690 0.75 -0.2

Or see this region's nucleotide sequence