Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01510 and BWI76_RS01515 are separated by 37 nucleotides BWI76_RS01515 and BWI76_RS01520 are separated by 3 nucleotides BWI76_RS01520 and BWI76_RS01525 are separated by 172 nucleotides
BWI76_RS01510: BWI76_RS01510 - anaerobic C4-dicarboxylate transporter, at 308,526 to 309,866
_RS01510
BWI76_RS01515: BWI76_RS01515 - PTS family cellobiose transporter subunit IIA, at 309,904 to 310,221
_RS01515
BWI76_RS01520: BWI76_RS01520 - PTS sugar transporter subunit IIB, at 310,225 to 310,530
_RS01520
BWI76_RS01525: BWI76_RS01525 - sensor domain-containing diguanylate cyclase, at 310,703 to 312,235
_RS01525
Position (kb) 309
310
311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 308.923 kb on - strand, within BWI76_RS01510 at 308.946 kb on - strand, within BWI76_RS01510 at 308.953 kb on - strand, within BWI76_RS01510 at 308.983 kb on + strand, within BWI76_RS01510 at 309.007 kb on + strand, within BWI76_RS01510 at 309.060 kb on + strand, within BWI76_RS01510 at 309.224 kb on - strand, within BWI76_RS01510 at 309.324 kb on - strand, within BWI76_RS01510 at 309.517 kb on - strand, within BWI76_RS01510 at 309.553 kb on - strand, within BWI76_RS01510 at 309.559 kb on - strand, within BWI76_RS01510 at 309.747 kb on + strand at 309.976 kb on + strand, within BWI76_RS01515 at 309.981 kb on + strand, within BWI76_RS01515 at 310.030 kb on + strand, within BWI76_RS01515 at 310.030 kb on + strand, within BWI76_RS01515 at 310.038 kb on - strand, within BWI76_RS01515 at 310.178 kb on + strand, within BWI76_RS01515 at 310.237 kb on + strand at 310.325 kb on + strand, within BWI76_RS01520 at 310.325 kb on + strand, within BWI76_RS01520 at 310.325 kb on + strand, within BWI76_RS01520 at 310.325 kb on + strand, within BWI76_RS01520 at 310.333 kb on - strand, within BWI76_RS01520 at 310.359 kb on + strand, within BWI76_RS01520 at 310.518 kb on - strand at 310.548 kb on - strand at 310.616 kb on - strand at 310.695 kb on - strand at 310.810 kb on - strand at 311.006 kb on - strand, within BWI76_RS01525 at 311.006 kb on - strand, within BWI76_RS01525 at 311.170 kb on - strand, within BWI76_RS01525 at 311.205 kb on - strand, within BWI76_RS01525
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X remove 308,923 - BWI76_RS01510 0.30 +0.2 308,946 - BWI76_RS01510 0.31 -0.2 308,953 - BWI76_RS01510 0.32 +0.3 308,983 + BWI76_RS01510 0.34 -0.3 309,007 + BWI76_RS01510 0.36 -0.1 309,060 + BWI76_RS01510 0.40 -0.8 309,224 - BWI76_RS01510 0.52 +0.8 309,324 - BWI76_RS01510 0.60 +0.6 309,517 - BWI76_RS01510 0.74 +0.2 309,553 - BWI76_RS01510 0.77 -0.2 309,559 - BWI76_RS01510 0.77 -2.5 309,747 + -0.8 309,976 + BWI76_RS01515 0.23 +0.1 309,981 + BWI76_RS01515 0.24 +0.1 310,030 + BWI76_RS01515 0.40 +1.0 310,030 + BWI76_RS01515 0.40 +0.0 310,038 - BWI76_RS01515 0.42 +1.8 310,178 + BWI76_RS01515 0.86 +0.3 310,237 + +0.6 310,325 + BWI76_RS01520 0.33 +0.2 310,325 + BWI76_RS01520 0.33 +0.5 310,325 + BWI76_RS01520 0.33 -0.2 310,325 + BWI76_RS01520 0.33 -1.1 310,333 - BWI76_RS01520 0.35 +0.1 310,359 + BWI76_RS01520 0.44 +0.4 310,518 - -0.7 310,548 - -0.4 310,616 - +0.1 310,695 - -0.2 310,810 - +0.4 311,006 - BWI76_RS01525 0.20 +1.7 311,006 - BWI76_RS01525 0.20 -0.6 311,170 - BWI76_RS01525 0.30 +0.9 311,205 - BWI76_RS01525 0.33 -0.7
Or see this region's nucleotide sequence