Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07170

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07160 and BWI76_RS07165 are separated by 9 nucleotidesBWI76_RS07165 and BWI76_RS07170 are separated by 138 nucleotidesBWI76_RS07170 and BWI76_RS07175 are separated by 36 nucleotides BWI76_RS07160: BWI76_RS07160 - MBL fold hydrolase, at 1,504,661 to 1,505,488 _RS07160 BWI76_RS07165: BWI76_RS07165 - hypothetical protein, at 1,505,498 to 1,506,040 _RS07165 BWI76_RS07170: BWI76_RS07170 - LysR family transcriptional regulator, at 1,506,179 to 1,507,054 _RS07170 BWI76_RS07175: BWI76_RS07175 - GNAT family acetyltransferase, at 1,507,091 to 1,507,957 _RS07175 Position (kb) 1506 1507 1508Strain fitness (log2 ratio) -3 -2 -1 0 1at 1505.289 kb on + strand, within BWI76_RS07160at 1505.831 kb on - strand, within BWI76_RS07165at 1505.861 kb on + strand, within BWI76_RS07165at 1506.224 kb on - strandat 1506.570 kb on + strand, within BWI76_RS07170at 1506.685 kb on + strand, within BWI76_RS07170at 1506.786 kb on - strandat 1506.791 kb on - strand, within BWI76_RS07170at 1506.831 kb on - strand, within BWI76_RS07170at 1506.845 kb on - strand, within BWI76_RS07170at 1506.866 kb on - strand, within BWI76_RS07170at 1506.945 kb on + strand, within BWI76_RS07170at 1507.002 kb on - strandat 1507.069 kb on - strandat 1507.088 kb on + strandat 1507.100 kb on + strandat 1507.102 kb on - strandat 1507.115 kb on + strandat 1507.122 kb on - strandat 1507.190 kb on + strand, within BWI76_RS07175at 1507.197 kb on - strand, within BWI76_RS07175at 1507.231 kb on - strand, within BWI76_RS07175at 1507.231 kb on - strand, within BWI76_RS07175at 1507.233 kb on + strand, within BWI76_RS07175at 1507.269 kb on - strand, within BWI76_RS07175at 1507.313 kb on + strand, within BWI76_RS07175at 1507.318 kb on + strand, within BWI76_RS07175at 1507.387 kb on - strand, within BWI76_RS07175at 1507.408 kb on - strand, within BWI76_RS07175at 1507.408 kb on - strand, within BWI76_RS07175at 1507.480 kb on + strand, within BWI76_RS07175at 1507.558 kb on + strand, within BWI76_RS07175at 1507.569 kb on - strand, within BWI76_RS07175at 1507.602 kb on + strand, within BWI76_RS07175at 1507.610 kb on - strand, within BWI76_RS07175at 1507.643 kb on - strand, within BWI76_RS07175at 1507.816 kb on - strand, within BWI76_RS07175at 1507.822 kb on + strand, within BWI76_RS07175at 1507.830 kb on - strand, within BWI76_RS07175at 1507.844 kb on - strand, within BWI76_RS07175at 1507.853 kb on + strand, within BWI76_RS07175at 1507.859 kb on + strand, within BWI76_RS07175at 1507.869 kb on - strand, within BWI76_RS07175at 1507.894 kb on + strandat 1507.930 kb on + strandat 1507.991 kb on + strandat 1507.991 kb on + strandat 1507.999 kb on - strandat 1508.022 kb on - strandat 1508.030 kb on - strandat 1508.030 kb on - strandat 1508.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
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1,505,289 + BWI76_RS07160 0.76 -1.0
1,505,831 - BWI76_RS07165 0.61 +0.0
1,505,861 + BWI76_RS07165 0.67 -0.3
1,506,224 - -2.8
1,506,570 + BWI76_RS07170 0.45 +0.3
1,506,685 + BWI76_RS07170 0.58 -0.2
1,506,786 - -1.4
1,506,791 - BWI76_RS07170 0.70 -0.7
1,506,831 - BWI76_RS07170 0.74 +0.2
1,506,845 - BWI76_RS07170 0.76 +0.4
1,506,866 - BWI76_RS07170 0.78 -0.1
1,506,945 + BWI76_RS07170 0.87 -0.1
1,507,002 - +0.4
1,507,069 - -0.1
1,507,088 + -0.3
1,507,100 + -0.1
1,507,102 - -0.1
1,507,115 + +0.5
1,507,122 - -0.2
1,507,190 + BWI76_RS07175 0.11 +0.8
1,507,197 - BWI76_RS07175 0.12 +1.3
1,507,231 - BWI76_RS07175 0.16 +0.3
1,507,231 - BWI76_RS07175 0.16 +0.4
1,507,233 + BWI76_RS07175 0.16 -0.1
1,507,269 - BWI76_RS07175 0.21 -0.8
1,507,313 + BWI76_RS07175 0.26 +0.6
1,507,318 + BWI76_RS07175 0.26 +0.6
1,507,387 - BWI76_RS07175 0.34 -0.1
1,507,408 - BWI76_RS07175 0.37 +0.1
1,507,408 - BWI76_RS07175 0.37 -0.6
1,507,480 + BWI76_RS07175 0.45 +0.0
1,507,558 + BWI76_RS07175 0.54 -0.4
1,507,569 - BWI76_RS07175 0.55 -0.1
1,507,602 + BWI76_RS07175 0.59 -0.2
1,507,610 - BWI76_RS07175 0.60 -0.2
1,507,643 - BWI76_RS07175 0.64 -0.2
1,507,816 - BWI76_RS07175 0.84 +0.8
1,507,822 + BWI76_RS07175 0.84 -0.9
1,507,830 - BWI76_RS07175 0.85 +0.2
1,507,844 - BWI76_RS07175 0.87 +0.7
1,507,853 + BWI76_RS07175 0.88 -0.8
1,507,859 + BWI76_RS07175 0.89 +0.9
1,507,869 - BWI76_RS07175 0.90 -0.0
1,507,894 + -0.1
1,507,930 + +0.7
1,507,991 + +0.4
1,507,991 + -0.0
1,507,999 - +1.5
1,508,022 - -0.3
1,508,030 - +0.8
1,508,030 - +0.4
1,508,048 + -0.3

Or see this region's nucleotide sequence