Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33540

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,109,134	-		BPHYT_RS33535	0.60	-5.8
3,109,460	+		BPHYT_RS33535	0.76	-7.9
3,109,460	+		BPHYT_RS33535	0.76	-4.8
3,109,461	-		BPHYT_RS33535	0.76	-4.6
3,109,461	-		BPHYT_RS33535	0.76	-3.8
3,109,462	+		BPHYT_RS33535	0.76	-2.6
3,109,462	+		BPHYT_RS33535	0.76	-4.9
3,109,462	+		BPHYT_RS33535	0.76	-4.0
3,109,462	+		BPHYT_RS33535	0.76	-7.5
3,109,462	+		BPHYT_RS33535	0.76	-6.7
3,109,462	+		BPHYT_RS33535	0.76	-3.9
3,109,462	+		BPHYT_RS33535	0.76	-5.0
3,109,462	+		BPHYT_RS33535	0.76	-8.0
3,109,462	+		BPHYT_RS33535	0.76	-3.4
3,109,462	+		BPHYT_RS33535	0.76	-5.1
3,109,462	+		BPHYT_RS33535	0.76	-2.3
3,109,462	+		BPHYT_RS33535	0.76	-5.2
3,109,462	+		BPHYT_RS33535	0.76	-4.7
3,109,462	+		BPHYT_RS33535	0.76	-5.6
3,109,463	-		BPHYT_RS33535	0.76	-3.2
3,109,463	-		BPHYT_RS33535	0.76	-4.4
3,109,463	-		BPHYT_RS33535	0.76	-3.0
3,109,609	+		BPHYT_RS33535	0.83	-4.6
3,109,705	+		BPHYT_RS33535	0.88	-4.0
3,109,706	-		BPHYT_RS33535	0.88	-3.8
3,109,924	+				-6.7
3,109,926	+				-5.8
3,109,927	-				-8.5
3,109,970	+				-6.2
3,110,035	-				+0.6
3,110,106	+				-7.4
3,110,106	+				-5.2
3,110,180	+		BPHYT_RS33540	0.36	-5.1
3,110,180	+		BPHYT_RS33540	0.36	-4.9
3,110,180	+		BPHYT_RS33540	0.36	-2.6
3,110,218	-		BPHYT_RS33540	0.52	-0.6
3,110,370	+				-3.6
3,110,370	+				-4.7
3,110,370	+				-2.0
3,110,370	+				-6.1
3,110,370	+				-5.5
3,110,371	-				-1.8
3,110,371	-				+1.2
3,110,374	-				-0.4
3,110,374	-				-0.1