Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22015 and BPHYT_RS22020 are separated by 303 nucleotides BPHYT_RS22020 and BPHYT_RS22025 are separated by 51 nucleotides
BPHYT_RS22015: BPHYT_RS22015 - spermidine/putrescine ABC transporter ATPase, at 493,870 to 494,961
_RS22015
BPHYT_RS22020: BPHYT_RS22020 - IclR family transcriptional regulator, at 495,265 to 496,143
_RS22020
BPHYT_RS22025: BPHYT_RS22025 - porin, at 496,195 to 497,784
_RS22025
Position (kb) 495
496
497 Strain fitness (log2 ratio) -1
0
1
2 at 494.307 kb on - strand, within BPHYT_RS22015 at 494.325 kb on + strand, within BPHYT_RS22015 at 494.590 kb on - strand, within BPHYT_RS22015 at 495.104 kb on + strand at 495.105 kb on - strand at 495.226 kb on - strand at 495.572 kb on + strand, within BPHYT_RS22020 at 495.841 kb on + strand, within BPHYT_RS22020 at 496.262 kb on + strand at 496.332 kb on - strand at 496.506 kb on - strand, within BPHYT_RS22025 at 496.522 kb on - strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.587 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.748 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.851 kb on - strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.928 kb on + strand, within BPHYT_RS22025 at 497.109 kb on - strand, within BPHYT_RS22025
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 494,307 - BPHYT_RS22015 0.40 -0.1 494,325 + BPHYT_RS22015 0.42 -0.7 494,590 - BPHYT_RS22015 0.66 -0.7 495,104 + -0.0 495,105 - -1.2 495,226 - -0.8 495,572 + BPHYT_RS22020 0.35 -0.6 495,841 + BPHYT_RS22020 0.66 -0.3 496,262 + +0.2 496,332 - -0.5 496,506 - BPHYT_RS22025 0.20 -0.4 496,522 - BPHYT_RS22025 0.21 -0.1 496,559 + BPHYT_RS22025 0.23 -0.0 496,559 + BPHYT_RS22025 0.23 -1.7 496,587 - BPHYT_RS22025 0.25 -1.2 496,591 - BPHYT_RS22025 0.25 +1.9 496,591 - BPHYT_RS22025 0.25 +0.9 496,748 + BPHYT_RS22025 0.35 +0.8 496,850 + BPHYT_RS22025 0.41 +1.1 496,850 + BPHYT_RS22025 0.41 +0.3 496,851 - BPHYT_RS22025 0.41 +0.4 496,898 + BPHYT_RS22025 0.44 -1.1 496,898 + BPHYT_RS22025 0.44 +0.0 496,898 + BPHYT_RS22025 0.44 -0.5 496,928 + BPHYT_RS22025 0.46 -0.3 497,109 - BPHYT_RS22025 0.57 -0.0
Or see this region's nucleotide sequence