Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14900

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,388,364	-		BPHYT_RS14895	0.75	-1.2
3,389,193	-		BPHYT_RS14900	0.51	-2.6
3,389,626	-				+0.5
3,389,657	-				+0.6
3,389,800	-				-0.2
3,389,917	-		BPHYT_RS14905	0.19	-2.0
3,390,199	-		BPHYT_RS14905	0.44	-0.1
3,390,199	-		BPHYT_RS14905	0.44	-0.2
3,390,220	-		BPHYT_RS14905	0.46	-1.7
3,390,229	-		BPHYT_RS14905	0.47	-0.5
3,390,394	-		BPHYT_RS14905	0.62	+0.6
3,390,394	-		BPHYT_RS14905	0.62	-0.3
3,390,451	-		BPHYT_RS14905	0.67	+1.3
3,390,451	-		BPHYT_RS14905	0.67	-0.2
3,390,475	-		BPHYT_RS14905	0.69	+0.8
3,390,574	-		BPHYT_RS14905	0.78	-0.6
3,390,630	-		BPHYT_RS14905	0.83	+1.1
3,390,630	-		BPHYT_RS14905	0.83	+3.7