Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11465

Experiment: KLEB17 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11455 and BWI76_RS11460 overlap by 17 nucleotidesBWI76_RS11460 and BWI76_RS11465 are separated by 152 nucleotidesBWI76_RS11465 and BWI76_RS11470 are separated by 27 nucleotides BWI76_RS11455: BWI76_RS11455 - AraC family transcriptional regulator, at 2,410,967 to 2,411,758 _RS11455 BWI76_RS11460: BWI76_RS11460 - DUF441 family protein, at 2,411,742 to 2,412,188 _RS11460 BWI76_RS11465: BWI76_RS11465 - hypothetical protein, at 2,412,341 to 2,412,841 _RS11465 BWI76_RS11470: BWI76_RS11470 - sensor domain-containing diguanylate cyclase, at 2,412,869 to 2,414,371 _RS11470 Position (kb) 2412 2413Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2411.569 kb on - strand, within BWI76_RS11455at 2411.656 kb on - strand, within BWI76_RS11455at 2411.861 kb on + strand, within BWI76_RS11460at 2412.074 kb on + strand, within BWI76_RS11460at 2412.164 kb on - strandat 2412.181 kb on - strandat 2412.197 kb on - strandat 2412.197 kb on - strandat 2412.367 kb on + strandat 2412.558 kb on + strand, within BWI76_RS11465at 2412.680 kb on + strand, within BWI76_RS11465at 2412.696 kb on + strand, within BWI76_RS11465at 2412.773 kb on - strand, within BWI76_RS11465at 2412.980 kb on + strandat 2413.026 kb on + strand, within BWI76_RS11470at 2413.041 kb on - strand, within BWI76_RS11470at 2413.125 kb on - strandat 2413.438 kb on + strand, within BWI76_RS11470at 2413.438 kb on + strand, within BWI76_RS11470at 2413.470 kb on + strand, within BWI76_RS11470at 2413.799 kb on + strand, within BWI76_RS11470at 2413.799 kb on + strand, within BWI76_RS11470at 2413.799 kb on + strandat 2413.807 kb on - strand, within BWI76_RS11470at 2413.814 kb on - strand, within BWI76_RS11470

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB17 MOI 1
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2,411,569 - BWI76_RS11455 0.76 -1.4
2,411,656 - BWI76_RS11455 0.87 -0.2
2,411,861 + BWI76_RS11460 0.27 +1.8
2,412,074 + BWI76_RS11460 0.74 +0.4
2,412,164 - +0.2
2,412,181 - -3.1
2,412,197 - +0.5
2,412,197 - +1.6
2,412,367 + -2.7
2,412,558 + BWI76_RS11465 0.43 -2.1
2,412,680 + BWI76_RS11465 0.68 -3.3
2,412,696 + BWI76_RS11465 0.71 -1.6
2,412,773 - BWI76_RS11465 0.86 -0.4
2,412,980 + -1.6
2,413,026 + BWI76_RS11470 0.10 -1.9
2,413,041 - BWI76_RS11470 0.11 +0.8
2,413,125 - +2.1
2,413,438 + BWI76_RS11470 0.38 -0.2
2,413,438 + BWI76_RS11470 0.38 -2.7
2,413,470 + BWI76_RS11470 0.40 -1.9
2,413,799 + BWI76_RS11470 0.62 -3.5
2,413,799 + BWI76_RS11470 0.62 -1.9
2,413,799 + +3.7
2,413,807 - BWI76_RS11470 0.62 -0.5
2,413,814 - BWI76_RS11470 0.63 +0.3

Or see this region's nucleotide sequence