Experiment: KLEB16 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13375 and BWI76_RS13380 are separated by 11 nucleotides BWI76_RS13380 and BWI76_RS13385 are separated by 168 nucleotides BWI76_RS13385 and BWI76_RS13390 overlap by 1 nucleotides BWI76_RS13390 and BWI76_RS13395 overlap by 1 nucleotides
BWI76_RS13375: BWI76_RS13375 - protease, at 2,789,088 to 2,791,052
_RS13375
BWI76_RS13380: BWI76_RS13380 - hypothetical protein, at 2,791,064 to 2,791,297
_RS13380
BWI76_RS13385: BWI76_RS13385 - DUF2474 domain-containing protein, at 2,791,466 to 2,791,591
_RS13385
BWI76_RS13390: BWI76_RS13390 - ubiquinol oxidase subunit II, at 2,791,591 to 2,792,601
_RS13390
BWI76_RS13395: BWI76_RS13395 - cytochrome D ubiquinol oxidase subunit I, at 2,792,601 to 2,793,998
_RS13395
Position (kb)
2791
2792
2793 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2791.123 kb on + strand, within BWI76_RS13380 at 2791.232 kb on + strand, within BWI76_RS13380 at 2791.348 kb on + strand at 2791.609 kb on + strand at 2791.672 kb on + strand at 2791.692 kb on + strand, within BWI76_RS13390 at 2791.692 kb on + strand, within BWI76_RS13390 at 2791.700 kb on - strand, within BWI76_RS13390 at 2791.742 kb on - strand, within BWI76_RS13390 at 2791.948 kb on - strand, within BWI76_RS13390 at 2792.004 kb on + strand, within BWI76_RS13390 at 2792.458 kb on + strand, within BWI76_RS13390 at 2792.540 kb on + strand at 2792.548 kb on - strand at 2792.611 kb on + strand at 2792.726 kb on - strand at 2792.938 kb on - strand, within BWI76_RS13395 at 2793.007 kb on - strand, within BWI76_RS13395 at 2793.150 kb on - strand, within BWI76_RS13395 at 2793.289 kb on + strand, within BWI76_RS13395 at 2793.425 kb on - strand, within BWI76_RS13395 at 2793.509 kb on - strand, within BWI76_RS13395
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB16 MOI 1 remove 2,791,123 + BWI76_RS13380 0.25 -0.6 2,791,232 + BWI76_RS13380 0.72 -0.5 2,791,348 + +1.3 2,791,609 + +2.6 2,791,672 + -1.6 2,791,692 + BWI76_RS13390 0.10 -2.5 2,791,692 + BWI76_RS13390 0.10 -0.3 2,791,700 - BWI76_RS13390 0.11 -1.9 2,791,742 - BWI76_RS13390 0.15 -0.2 2,791,948 - BWI76_RS13390 0.35 -0.4 2,792,004 + BWI76_RS13390 0.41 -0.5 2,792,458 + BWI76_RS13390 0.86 -1.5 2,792,540 + +0.4 2,792,548 - -0.5 2,792,611 + +0.0 2,792,726 - -0.2 2,792,938 - BWI76_RS13395 0.24 +0.6 2,793,007 - BWI76_RS13395 0.29 -1.1 2,793,150 - BWI76_RS13395 0.39 -0.0 2,793,289 + BWI76_RS13395 0.49 +0.8 2,793,425 - BWI76_RS13395 0.59 -2.8 2,793,509 - BWI76_RS13395 0.65 -0.7
Or see this region's nucleotide sequence