Strain Fitness in Pseudomonas putida KT2440 around PP_1482

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,685,867	+		PP_1481	0.36	-1.7
1,685,901	+		PP_1481	0.38	-0.4
1,685,901	+		PP_1481	0.38	-0.4
1,685,901	+		PP_1481	0.38	-0.1
1,685,901	+		PP_1481	0.38	+0.3
1,685,901	+		PP_1481	0.38	+0.6
1,685,902	-		PP_1481	0.38	-1.4
1,685,902	-		PP_1481	0.38	+1.9
1,685,919	+		PP_1481	0.40	-0.1
1,685,919	+		PP_1481	0.40	-0.6
1,685,919	+		PP_1481	0.40	+0.9
1,685,959	-		PP_1481	0.42	-0.5
1,686,143	+		PP_1481	0.55	-1.0
1,686,143	+		PP_1481	0.55	+0.5
1,686,330	+		PP_1481	0.68	-1.0
1,686,402	+		PP_1481	0.74	+0.7
1,686,842	+				-1.1
1,686,842	+				+0.5
1,686,843	-				-0.9
1,686,843	-				+0.2
1,686,843	-				+0.5
1,687,064	+		PP_1482	0.33	+0.2
1,687,065	-		PP_1482	0.33	+0.1
1,687,065	-		PP_1482	0.33	-1.2
1,687,157	+		PP_1482	0.45	-2.7
1,687,158	-		PP_1482	0.45	+0.1
1,687,158	-		PP_1482	0.45	+0.9
1,687,193	-		PP_1482	0.49	-1.4
1,687,354	-		PP_1482	0.69	-0.9
1,687,635	+				-1.2
1,687,635	+				+0.8
1,687,636	-				+0.9
1,687,636	-				-0.2
1,687,636	-				-0.1
1,687,636	-				+1.0
1,687,713	+		PP_1483	0.13	+0.1
1,687,713	+		PP_1483	0.13	+0.2
1,687,714	-		PP_1483	0.13	-0.7
1,687,714	-		PP_1483	0.13	+0.9
1,687,714	-		PP_1483	0.13	+0.1
1,687,956	+		PP_1483	0.40	-1.0
1,687,956	+		PP_1483	0.40	-1.4
1,687,957	-		PP_1483	0.40	+0.5
1,687,957	-		PP_1483	0.40	+0.5
1,688,112	+		PP_1483	0.57	+0.8
1,688,113	-		PP_1483	0.57	+0.1
1,688,127	+		PP_1483	0.59	-1.2
1,688,127	+		PP_1483	0.59	+0.6
1,688,127	+		PP_1483	0.59	+1.1
1,688,128	-		PP_1483	0.59	+0.3
1,688,128	-		PP_1483	0.59	+0.1
1,688,128	-		PP_1483	0.59	-0.5
1,688,160	+		PP_1483	0.62	+0.0
1,688,202	+		PP_1483	0.67	-2.0
1,688,202	+		PP_1483	0.67	+0.2
1,688,202	+		PP_1483	0.67	+0.8
1,688,202	+		PP_1483	0.67	+0.7
1,688,202	+		PP_1483	0.67	-0.4
1,688,202	+		PP_1483	0.67	-0.3
1,688,203	-		PP_1483	0.67	+0.5
1,688,205	+		PP_1483	0.67	+0.1
1,688,362	+		PP_1483	0.84	-0.4
1,688,363	-		PP_1483	0.85	+0.2
1,688,364	+		PP_1483	0.85	-0.1
1,688,364	+		PP_1483	0.85	+0.5
1,688,364	+		PP_1483	0.85	-0.6
1,688,364	+		PP_1483	0.85	+0.3
1,688,364	+		PP_1483	0.85	-0.2
1,688,364	+		PP_1483	0.85	-0.4
1,688,365	-		PP_1483	0.85	-0.8
1,688,365	-		PP_1483	0.85	+0.3
1,688,365	-		PP_1483	0.85	+0.5
1,688,365	-		PP_1483	0.85	+0.2
1,688,403	+		PP_1483	0.89	-2.2