Strain Fitness in Pseudomonas putida KT2440 around PP_0412

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0411 and PP_0412 are separated by 40 nucleotidesPP_0412 and PP_0413 are separated by 60 nucleotides PP_0411: PP_0411 - Polyamine ABC transporter, ATP-binding protein, at 499,452 to 500,576 _0411 PP_0412: PP_0412 - Polyamine ABC transporter, periplasmic polyamine-binding protein, at 500,617 to 501,651 _0412 PP_0413: PP_0413 - Polyamine ABC transporter, permease protein, at 501,712 to 502,959 _0413 Position (kb) 500 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1at 499.716 kb on - strand, within PP_0411at 499.737 kb on + strand, within PP_0411at 499.737 kb on + strand, within PP_0411at 499.737 kb on + strand, within PP_0411at 499.738 kb on - strand, within PP_0411at 499.951 kb on + strand, within PP_0411at 499.952 kb on - strand, within PP_0411at 500.053 kb on - strand, within PP_0411at 500.053 kb on - strand, within PP_0411at 500.053 kb on - strand, within PP_0411at 500.327 kb on - strand, within PP_0411at 500.406 kb on + strand, within PP_0411at 500.407 kb on - strand, within PP_0411at 500.512 kb on + strandat 500.512 kb on + strandat 500.512 kb on + strandat 500.512 kb on + strandat 500.513 kb on - strandat 500.513 kb on - strandat 500.515 kb on + strandat 500.515 kb on + strandat 500.516 kb on - strandat 500.598 kb on + strandat 500.598 kb on + strandat 500.598 kb on + strandat 500.599 kb on - strandat 500.612 kb on + strandat 500.613 kb on - strandat 500.613 kb on - strandat 500.616 kb on - strandat 500.743 kb on + strand, within PP_0412at 500.744 kb on - strand, within PP_0412at 500.744 kb on - strand, within PP_0412at 500.744 kb on - strand, within PP_0412at 500.744 kb on - strand, within PP_0412at 500.791 kb on + strand, within PP_0412at 500.792 kb on - strand, within PP_0412at 500.792 kb on - strand, within PP_0412at 500.856 kb on - strand, within PP_0412at 500.944 kb on + strand, within PP_0412at 500.945 kb on - strand, within PP_0412at 501.007 kb on + strand, within PP_0412at 501.008 kb on - strand, within PP_0412at 501.008 kb on - strand, within PP_0412at 501.106 kb on + strand, within PP_0412at 501.107 kb on - strand, within PP_0412at 501.158 kb on - strand, within PP_0412at 501.158 kb on - strand, within PP_0412at 501.298 kb on + strand, within PP_0412at 501.310 kb on - strand, within PP_0412at 501.364 kb on + strand, within PP_0412at 501.365 kb on - strand, within PP_0412at 501.422 kb on - strand, within PP_0412at 501.433 kb on + strand, within PP_0412at 501.463 kb on + strand, within PP_0412at 501.463 kb on + strand, within PP_0412at 501.482 kb on - strand, within PP_0412at 501.650 kb on - strandat 501.650 kb on - strandat 501.696 kb on + strandat 501.697 kb on - strandat 501.871 kb on + strand, within PP_0413at 501.872 kb on - strand, within PP_0413at 501.970 kb on + strand, within PP_0413at 501.970 kb on + strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 502.120 kb on + strand, within PP_0413at 502.120 kb on + strand, within PP_0413at 502.120 kb on + strand, within PP_0413at 502.121 kb on - strand, within PP_0413at 502.121 kb on - strand, within PP_0413at 502.121 kb on - strand, within PP_0413at 502.122 kb on + strand, within PP_0413at 502.122 kb on + strand, within PP_0413at 502.123 kb on - strand, within PP_0413at 502.123 kb on - strand, within PP_0413at 502.123 kb on - strand, within PP_0413at 502.168 kb on + strand, within PP_0413at 502.192 kb on - strand, within PP_0413at 502.214 kb on - strand, within PP_0413at 502.214 kb on - strand, within PP_0413at 502.260 kb on - strand, within PP_0413at 502.288 kb on + strand, within PP_0413at 502.338 kb on + strand, within PP_0413at 502.338 kb on + strand, within PP_0413at 502.338 kb on + strand, within PP_0413at 502.339 kb on - strand, within PP_0413at 502.339 kb on - strand, within PP_0413at 502.339 kb on - strand, within PP_0413at 502.357 kb on + strand, within PP_0413at 502.369 kb on + strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.452 kb on - strand, within PP_0413at 502.567 kb on + strand, within PP_0413at 502.568 kb on - strand, within PP_0413at 502.568 kb on - strand, within PP_0413at 502.615 kb on + strand, within PP_0413at 502.615 kb on + strand, within PP_0413at 502.615 kb on + strand, within PP_0413at 502.632 kb on + strand, within PP_0413at 502.633 kb on - strand, within PP_0413at 502.645 kb on + strand, within PP_0413

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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499,716 - PP_0411 0.23 +0.2
499,737 + PP_0411 0.25 +0.2
499,737 + PP_0411 0.25 -3.0
499,737 + PP_0411 0.25 -0.2
499,738 - PP_0411 0.25 -0.2
499,951 + PP_0411 0.44 -0.6
499,952 - PP_0411 0.44 -1.8
500,053 - PP_0411 0.53 +0.5
500,053 - PP_0411 0.53 -1.1
500,053 - PP_0411 0.53 -0.5
500,327 - PP_0411 0.78 -0.5
500,406 + PP_0411 0.85 +1.4
500,407 - PP_0411 0.85 +0.9
500,512 + -1.5
500,512 + +0.5
500,512 + +1.0
500,512 + +0.8
500,513 - -1.0
500,513 - -1.5
500,515 + -1.1
500,515 + -1.2
500,516 - +1.1
500,598 + -2.4
500,598 + -1.3
500,598 + -0.7
500,599 - -0.6
500,612 + -1.4
500,613 - +0.1
500,613 - -1.7
500,616 - +1.5
500,743 + PP_0412 0.12 +0.2
500,744 - PP_0412 0.12 -0.1
500,744 - PP_0412 0.12 -0.1
500,744 - PP_0412 0.12 -1.7
500,744 - PP_0412 0.12 -1.9
500,791 + PP_0412 0.17 -0.8
500,792 - PP_0412 0.17 -0.7
500,792 - PP_0412 0.17 +0.9
500,856 - PP_0412 0.23 -1.2
500,944 + PP_0412 0.32 +0.7
500,945 - PP_0412 0.32 -0.9
501,007 + PP_0412 0.38 +1.2
501,008 - PP_0412 0.38 -0.9
501,008 - PP_0412 0.38 +0.4
501,106 + PP_0412 0.47 -1.6
501,107 - PP_0412 0.47 -3.2
501,158 - PP_0412 0.52 +0.4
501,158 - PP_0412 0.52 -1.0
501,298 + PP_0412 0.66 -0.1
501,310 - PP_0412 0.67 +1.1
501,364 + PP_0412 0.72 -0.3
501,365 - PP_0412 0.72 -0.4
501,422 - PP_0412 0.78 -0.1
501,433 + PP_0412 0.79 -2.2
501,463 + PP_0412 0.82 +0.1
501,463 + PP_0412 0.82 -0.1
501,482 - PP_0412 0.84 +0.4
501,650 - -3.3
501,650 - +1.5
501,696 + -0.2
501,697 - -0.4
501,871 + PP_0413 0.13 -0.5
501,872 - PP_0413 0.13 +0.9
501,970 + PP_0413 0.21 +0.6
501,970 + PP_0413 0.21 -0.1
501,971 - PP_0413 0.21 +0.8
501,971 - PP_0413 0.21 -0.4
501,971 - PP_0413 0.21 +0.7
501,971 - PP_0413 0.21 +0.2
502,120 + PP_0413 0.33 +1.6
502,120 + PP_0413 0.33 +0.0
502,120 + PP_0413 0.33 +0.4
502,121 - PP_0413 0.33 +0.5
502,121 - PP_0413 0.33 -0.4
502,121 - PP_0413 0.33 -0.9
502,122 + PP_0413 0.33 -2.3
502,122 + PP_0413 0.33 -2.0
502,123 - PP_0413 0.33 -0.2
502,123 - PP_0413 0.33 +0.8
502,123 - PP_0413 0.33 -0.3
502,168 + PP_0413 0.37 +0.1
502,192 - PP_0413 0.38 +0.6
502,214 - PP_0413 0.40 +1.0
502,214 - PP_0413 0.40 +1.4
502,260 - PP_0413 0.44 +0.9
502,288 + PP_0413 0.46 +1.0
502,338 + PP_0413 0.50 +0.7
502,338 + PP_0413 0.50 -0.3
502,338 + PP_0413 0.50 +0.1
502,339 - PP_0413 0.50 +0.9
502,339 - PP_0413 0.50 -0.0
502,339 - PP_0413 0.50 +0.1
502,357 + PP_0413 0.52 +0.7
502,369 + PP_0413 0.53 -0.7
502,370 - PP_0413 0.53 -0.5
502,370 - PP_0413 0.53 +0.7
502,370 - PP_0413 0.53 +0.3
502,370 - PP_0413 0.53 -0.2
502,452 - PP_0413 0.59 +0.1
502,567 + PP_0413 0.69 -0.6
502,568 - PP_0413 0.69 -0.2
502,568 - PP_0413 0.69 -0.2
502,615 + PP_0413 0.72 +1.3
502,615 + PP_0413 0.72 +0.3
502,615 + PP_0413 0.72 +0.4
502,632 + PP_0413 0.74 +0.1
502,633 - PP_0413 0.74 +0.1
502,645 + PP_0413 0.75 +1.1

Or see this region's nucleotide sequence