Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20225

Experiment: Stem-Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Upstate
4,380,529	+		DZA65_RS20220	0.74	-1.2
4,380,529	+		DZA65_RS20220	0.74	+2.3
4,380,635	+		DZA65_RS20220	0.81	-0.9
4,380,635	+		DZA65_RS20220	0.81	-3.5
4,380,635	+		DZA65_RS20220	0.81	-2.0
4,380,636	-		DZA65_RS20220	0.81	-1.3
4,380,959	+				-1.2
4,380,959	+				-0.5
4,380,959	+				-1.2
4,380,959	+				-0.9
4,381,055	+				-1.2
4,381,055	+				-0.5
4,381,055	+				-2.0
4,381,055	+				-3.1
4,381,055	+				+0.7
4,381,056	-				+0.2
4,381,056	-				-2.5
4,381,056	-				-1.9
4,381,150	-				-1.2
4,381,157	+				-1.5
4,381,157	+				-0.3
4,381,158	-				+1.6
4,381,158	-				+1.3
4,381,158	-				-2.5
4,381,235	+				-1.7
4,381,236	-				+0.1
4,381,266	+				-2.0
4,381,266	+				+1.0
4,381,266	+				+1.2
4,381,266	+				-1.2
4,381,266	+				-0.2
4,381,267	-				-1.5
4,381,267	-				+0.4
4,381,271	+				-0.0
4,381,271	+				-2.0
4,381,271	+				-0.1
4,381,271	+				-2.0
4,381,272	-				-2.5
4,381,272	-				-1.6
4,381,272	-				+0.3
4,381,280	+				+0.8
4,381,280	+				-0.0
4,381,281	-				-0.9
4,381,389	+				-3.2
4,381,432	+				+1.3
4,381,432	+				-0.5
4,381,432	+				+1.0
4,381,488	+				+0.3
4,381,488	+				+0.6
4,381,489	-				-0.5
4,381,508	+				+0.4
4,381,508	+				-0.5
4,381,508	+				-2.1
4,381,615	+				-0.5
4,381,616	-				+0.9
4,381,719	+		DZA65_RS20225	0.17	-3.5
4,381,719	+		DZA65_RS20225	0.17	-2.2
4,381,775	+		DZA65_RS20225	0.21	-1.3
4,381,775	+		DZA65_RS20225	0.21	-1.2
4,381,775	+		DZA65_RS20225	0.21	-1.9
4,381,776	-		DZA65_RS20225	0.21	+0.0
4,381,776	-		DZA65_RS20225	0.21	-1.5
4,381,776	-		DZA65_RS20225	0.21	-2.0
4,381,776	-		DZA65_RS20225	0.21	-0.5
4,381,776	-		DZA65_RS20225	0.21	-0.9
4,381,776	-		DZA65_RS20225	0.21	-1.7
4,381,885	+		DZA65_RS20225	0.29	-3.4
4,381,885	+		DZA65_RS20225	0.29	-0.9
4,381,885	+		DZA65_RS20225	0.29	-1.5
4,381,934	+		DZA65_RS20225	0.32	+0.1
4,381,934	+		DZA65_RS20225	0.32	+0.1
4,381,935	-		DZA65_RS20225	0.33	-1.9
4,382,112	+		DZA65_RS20225	0.45	-2.3
4,382,184	+		DZA65_RS20225	0.51	-0.9
4,382,184	+		DZA65_RS20225	0.51	-2.0
4,382,184	+		DZA65_RS20225	0.51	-1.1
4,382,184	+		DZA65_RS20225	0.51	-1.2
4,382,184	+		DZA65_RS20225	0.51	-2.0
4,382,184	+		DZA65_RS20225	0.51	-2.0
4,382,184	+		DZA65_RS20225	0.51	-0.5
4,382,185	-		DZA65_RS20225	0.51	-1.5
4,382,185	-		DZA65_RS20225	0.51	+0.6
4,382,185	-		DZA65_RS20225	0.51	-2.2
4,382,185	-		DZA65_RS20225	0.51	-1.7
4,382,185	-		DZA65_RS20225	0.51	+2.1
4,382,185	-		DZA65_RS20225	0.51	-2.3
4,382,185	-		DZA65_RS20225	0.51	-1.3
4,382,185	-		DZA65_RS20225	0.51	-2.0
4,382,185	-		DZA65_RS20225	0.51	+0.1
4,382,185	-		DZA65_RS20225	0.51	-2.2
4,382,234	+		DZA65_RS20225	0.54	-0.5
4,382,234	+		DZA65_RS20225	0.54	-1.3
4,382,234	+		DZA65_RS20225	0.54	-2.0
4,382,234	+		DZA65_RS20225	0.54	-2.4
4,382,234	+		DZA65_RS20225	0.54	+0.6
4,382,234	+		DZA65_RS20225	0.54	-0.9
4,382,235	-		DZA65_RS20225	0.55	-2.8
4,382,235	-		DZA65_RS20225	0.55	-2.2
4,382,235	-		DZA65_RS20225	0.55	+1.8
4,382,821	+				+0.1
4,382,821	+				-2.0
4,382,821	+				-0.8
4,382,822	-				-1.9
4,382,870	+				-1.7
4,382,870	+				+1.0
4,382,870	+				-0.9
4,382,894	+				-1.5
4,382,894	+				+2.1
4,382,894	+				-2.3
4,382,894	+				-0.5
4,382,894	+				+3.3
4,382,894	+				+1.0
4,382,895	-				-0.9
4,382,895	-				+1.3
4,382,895	-				+0.9
4,382,895	-				+2.0
4,382,895	-				-1.5
4,382,895	-				-0.5
4,382,895	-				-1.5
4,382,895	-				-2.0
4,382,896	+				+2.1
4,382,915	-				-1.6
4,382,945	+				+0.4
4,382,945	+				-2.9
4,382,945	+				-0.9
4,382,946	-				-1.7
4,382,946	-				+1.1
4,382,946	-				+1.5
4,382,946	-				-2.0
4,383,008	+				+2.6
4,383,008	+				+1.4
4,383,008	+				-2.2
4,383,008	+				+0.9
4,383,008	+				-2.7
4,383,008	+				+2.0
4,383,008	+				-1.2
4,383,008	+				-2.2
4,383,009	-				+1.6
4,383,009	-				+0.1
4,383,009	-				+2.0
4,383,009	-				+0.5
4,383,009	-				-2.2
4,383,009	-				-0.9
4,383,009	-				+2.3
4,383,009	-				-0.9
4,383,092	-				-0.7
4,383,092	-				-1.0
4,383,131	+		DZA65_RS20230	0.11	+0.1
4,383,132	-		DZA65_RS20230	0.11	-1.2
4,383,147	+		DZA65_RS20230	0.12	-1.0
4,383,256	-		DZA65_RS20230	0.19	-1.2
4,383,328	+		DZA65_RS20230	0.23	-2.0
4,383,328	+		DZA65_RS20230	0.23	-1.7
4,383,328	+		DZA65_RS20230	0.23	+0.5
4,383,329	-		DZA65_RS20230	0.23	-2.5
4,383,329	-		DZA65_RS20230	0.23	-0.9
4,383,440	+		DZA65_RS20230	0.30	+0.1
4,383,440	+		DZA65_RS20230	0.30	-0.9
4,383,440	+		DZA65_RS20230	0.30	-1.5
4,383,440	+		DZA65_RS20230	0.30	+3.4
4,383,441	-		DZA65_RS20230	0.30	-3.7
4,383,441	-		DZA65_RS20230	0.30	-3.0
4,383,458	+		DZA65_RS20230	0.31	+1.7
4,383,458	+		DZA65_RS20230	0.31	+0.2
4,383,458	+		DZA65_RS20230	0.31	-1.2
4,383,459	-		DZA65_RS20230	0.31	-0.0
4,383,459	-		DZA65_RS20230	0.31	+3.1
4,383,459	-		DZA65_RS20230	0.31	-2.2
4,383,459	-		DZA65_RS20230	0.31	-0.3
4,383,459	-		DZA65_RS20230	0.31	-0.9
4,383,469	+		DZA65_RS20230	0.32	-0.7
4,383,469	+		DZA65_RS20230	0.32	-0.5
4,383,469	+		DZA65_RS20230	0.32	+0.2
4,383,469	+		DZA65_RS20230	0.32	-0.5
4,383,469	+		DZA65_RS20230	0.32	-0.3
4,383,469	+		DZA65_RS20230	0.32	-0.5
4,383,469	+		DZA65_RS20230	0.32	-0.8
4,383,469	+		DZA65_RS20230	0.32	-0.4
4,383,469	+		DZA65_RS20230	0.32	-2.6
4,383,469	+		DZA65_RS20230	0.32	+0.9
4,383,470	-		DZA65_RS20230	0.32	+2.3
4,383,470	-		DZA65_RS20230	0.32	-3.1
4,383,470	-		DZA65_RS20230	0.32	+0.3
4,383,746	+				-1.2
4,383,746	+		DZA65_RS20230	0.49	-1.2
4,383,746	+		DZA65_RS20230	0.49	-1.7
4,383,747	-		DZA65_RS20230	0.49	-0.9
4,383,747	-		DZA65_RS20230	0.49	+1.1
4,383,747	-		DZA65_RS20230	0.49	-1.7
4,383,747	-		DZA65_RS20230	0.49	+0.9
4,383,747	-		DZA65_RS20230	0.49	-0.9
4,383,761	+		DZA65_RS20230	0.50	+1.3
4,383,761	+		DZA65_RS20230	0.50	+0.3
4,383,761	+		DZA65_RS20230	0.50	+1.2
4,383,761	+		DZA65_RS20230	0.50	-0.5
4,383,761	+		DZA65_RS20230	0.50	+0.7
4,383,761	+		DZA65_RS20230	0.50	+0.5
4,383,762	-		DZA65_RS20230	0.50	+0.1
4,383,762	-		DZA65_RS20230	0.50	-1.7
4,383,762	-		DZA65_RS20230	0.50	+0.1
4,383,762	-		DZA65_RS20230	0.50	+0.1
4,383,762	-		DZA65_RS20230	0.50	-1.6
4,383,762	-		DZA65_RS20230	0.50	+4.1
4,383,762	-		DZA65_RS20230	0.50	+0.8
4,383,762	-		DZA65_RS20230	0.50	+0.3
4,383,762	-		DZA65_RS20230	0.50	-0.9
4,383,815	+		DZA65_RS20230	0.53	-1.0
4,383,815	+		DZA65_RS20230	0.53	-2.2
4,383,816	-		DZA65_RS20230	0.53	+0.1
4,383,816	-		DZA65_RS20230	0.53	-2.7
4,383,816	-		DZA65_RS20230	0.53	+3.3
4,383,840	+				-2.0
4,383,841	-		DZA65_RS20230	0.54	-0.5
4,383,841	-		DZA65_RS20230	0.54	-1.9