Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt spoT and trmH are separated by 6 nucleotides trmH and recG are separated by 5 nucleotides recG and BNILDI_04095 overlap by 16 nucleotides BNILDI_04095 and gltS are separated by 2 nucleotides
BNILDI_04080: spoT - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 804,055 to 806,163
spoT
BNILDI_04085: trmH - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 806,170 to 806,859
trmH
BNILDI_04090: recG - ATP-dependent DNA helicase RecG, at 806,865 to 808,946
recG
BNILDI_04095: BNILDI_04095 - Ybl159, at 808,931 to 809,797
_04095
BNILDI_04100: gltS - sodium/glutamate symporter, at 809,800 to 811,005
gltS
Position (kb) 806
807
808
809 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 805.995 kb on + strand at 806.103 kb on + strand at 806.169 kb on + strand at 806.170 kb on - strand at 806.185 kb on + strand at 806.370 kb on + strand, within trmH at 806.370 kb on + strand, within trmH at 806.371 kb on - strand, within trmH at 806.680 kb on + strand, within trmH at 806.839 kb on - strand at 806.841 kb on + strand at 806.841 kb on + strand at 806.858 kb on - strand at 806.858 kb on - strand at 806.882 kb on - strand at 806.882 kb on - strand at 806.927 kb on + strand at 806.958 kb on - strand at 806.972 kb on - strand at 806.977 kb on + strand at 806.977 kb on + strand at 806.977 kb on + strand at 807.031 kb on + strand at 807.031 kb on + strand at 807.080 kb on + strand, within recG at 807.081 kb on - strand, within recG at 807.081 kb on - strand, within recG at 807.362 kb on - strand, within recG at 807.580 kb on + strand, within recG at 807.581 kb on - strand, within recG at 807.642 kb on - strand, within recG at 807.757 kb on + strand, within recG at 807.757 kb on + strand, within recG at 807.757 kb on + strand, within recG at 807.757 kb on + strand, within recG at 807.767 kb on + strand, within recG at 807.823 kb on + strand, within recG at 807.824 kb on - strand, within recG at 807.824 kb on - strand, within recG at 807.935 kb on + strand, within recG at 807.936 kb on - strand, within recG at 808.182 kb on + strand, within recG at 808.241 kb on + strand, within recG at 808.251 kb on - strand, within recG at 808.304 kb on - strand, within recG at 808.334 kb on + strand, within recG at 808.334 kb on + strand, within recG at 808.334 kb on + strand, within recG at 808.335 kb on - strand, within recG at 808.335 kb on - strand, within recG at 808.335 kb on - strand, within recG at 808.383 kb on - strand, within recG at 808.433 kb on - strand, within recG at 808.597 kb on + strand, within recG at 808.618 kb on + strand, within recG at 808.656 kb on + strand, within recG at 808.744 kb on + strand at 808.771 kb on + strand at 808.771 kb on + strand at 808.772 kb on - strand at 808.776 kb on - strand at 809.115 kb on - strand, within BNILDI_04095 at 809.232 kb on - strand, within BNILDI_04095 at 809.232 kb on - strand, within BNILDI_04095 at 809.232 kb on - strand, within BNILDI_04095 at 809.232 kb on - strand, within BNILDI_04095 at 809.244 kb on + strand, within BNILDI_04095 at 809.245 kb on - strand, within BNILDI_04095 at 809.336 kb on - strand, within BNILDI_04095 at 809.389 kb on + strand, within BNILDI_04095 at 809.514 kb on + strand, within BNILDI_04095 at 809.582 kb on + strand, within BNILDI_04095 at 809.582 kb on + strand, within BNILDI_04095 at 809.582 kb on + strand, within BNILDI_04095 at 809.602 kb on - strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.619 kb on + strand, within BNILDI_04095 at 809.620 kb on - strand, within BNILDI_04095 at 809.620 kb on - strand, within BNILDI_04095 at 809.620 kb on - strand, within BNILDI_04095 at 809.622 kb on + strand, within BNILDI_04095 at 809.622 kb on + strand, within BNILDI_04095 at 809.623 kb on - strand, within BNILDI_04095 at 809.766 kb on - strand at 809.824 kb on + strand at 809.824 kb on + strand at 809.824 kb on + strand at 809.825 kb on - strand at 809.825 kb on - strand at 809.828 kb on + strand at 809.829 kb on - strand at 809.836 kb on - strand at 809.836 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 805,995 + +0.7 806,103 + -2.2 806,169 + +1.3 806,170 - +0.0 806,185 + +0.4 806,370 + trmH BNILDI_04085 0.29 +0.1 806,370 + trmH BNILDI_04085 0.29 +0.5 806,371 - trmH BNILDI_04085 0.29 -0.6 806,680 + trmH BNILDI_04085 0.74 +0.8 806,839 - -2.7 806,841 + -0.2 806,841 + -0.2 806,858 - +0.1 806,858 - -0.8 806,882 - +0.5 806,882 - -0.2 806,927 + -1.6 806,958 - -0.4 806,972 - -0.9 806,977 + -0.4 806,977 + -0.3 806,977 + -1.4 807,031 + -0.6 807,031 + -0.7 807,080 + recG BNILDI_04090 0.10 +0.9 807,081 - recG BNILDI_04090 0.10 -1.0 807,081 - recG BNILDI_04090 0.10 +0.3 807,362 - recG BNILDI_04090 0.24 -2.5 807,580 + recG BNILDI_04090 0.34 -0.7 807,581 - recG BNILDI_04090 0.34 -2.1 807,642 - recG BNILDI_04090 0.37 -1.2 807,757 + recG BNILDI_04090 0.43 +0.2 807,757 + recG BNILDI_04090 0.43 +0.8 807,757 + recG BNILDI_04090 0.43 +1.3 807,757 + recG BNILDI_04090 0.43 -1.6 807,767 + recG BNILDI_04090 0.43 -0.2 807,823 + recG BNILDI_04090 0.46 -0.4 807,824 - recG BNILDI_04090 0.46 -2.6 807,824 - recG BNILDI_04090 0.46 +0.3 807,935 + recG BNILDI_04090 0.51 -0.3 807,936 - recG BNILDI_04090 0.51 -1.8 808,182 + recG BNILDI_04090 0.63 -1.0 808,241 + recG BNILDI_04090 0.66 -1.8 808,251 - recG BNILDI_04090 0.67 -0.6 808,304 - recG BNILDI_04090 0.69 -1.2 808,334 + recG BNILDI_04090 0.71 -0.3 808,334 + recG BNILDI_04090 0.71 -0.4 808,334 + recG BNILDI_04090 0.71 -1.5 808,335 - recG BNILDI_04090 0.71 -3.8 808,335 - recG BNILDI_04090 0.71 -3.1 808,335 - recG BNILDI_04090 0.71 -1.3 808,383 - recG BNILDI_04090 0.73 -0.5 808,433 - recG BNILDI_04090 0.75 +0.4 808,597 + recG BNILDI_04090 0.83 +1.6 808,618 + recG BNILDI_04090 0.84 +0.1 808,656 + recG BNILDI_04090 0.86 -1.3 808,744 + +0.7 808,771 + -0.5 808,771 + -0.2 808,772 - -0.6 808,776 - +0.0 809,115 - BNILDI_04095 0.21 -0.1 809,232 - BNILDI_04095 0.35 +0.2 809,232 - BNILDI_04095 0.35 +0.1 809,232 - BNILDI_04095 0.35 -0.4 809,232 - BNILDI_04095 0.35 +0.6 809,244 + BNILDI_04095 0.36 +0.7 809,245 - BNILDI_04095 0.36 -0.1 809,336 - BNILDI_04095 0.47 +1.3 809,389 + BNILDI_04095 0.53 -2.0 809,514 + BNILDI_04095 0.67 -0.7 809,582 + BNILDI_04095 0.75 +0.9 809,582 + BNILDI_04095 0.75 +0.9 809,582 + BNILDI_04095 0.75 -0.4 809,602 - BNILDI_04095 0.77 +0.7 809,619 + BNILDI_04095 0.79 -0.9 809,619 + BNILDI_04095 0.79 -0.2 809,619 + BNILDI_04095 0.79 +0.5 809,619 + BNILDI_04095 0.79 +0.9 809,619 + BNILDI_04095 0.79 +0.7 809,619 + BNILDI_04095 0.79 +1.2 809,620 - BNILDI_04095 0.79 -1.3 809,620 - BNILDI_04095 0.79 +0.2 809,620 - BNILDI_04095 0.79 +0.0 809,622 + BNILDI_04095 0.80 -3.4 809,622 + BNILDI_04095 0.80 -0.8 809,623 - BNILDI_04095 0.80 -0.2 809,766 - -0.1 809,824 + +0.4 809,824 + -0.2 809,824 + -0.0 809,825 - -0.4 809,825 - -0.2 809,828 + +0.1 809,829 - +1.3 809,836 - +0.2 809,836 - +0.9
Or see this region's nucleotide sequence