Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17230

Experiment: L-Rhamnose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdgcJ and cdgI are separated by 180 nucleotidescdgI and yeaH are separated by 146 nucleotides NOLOHH_17225: dgcJ - diguanylate cyclase DgcJ, at 3,378,391 to 3,379,881 dgcJ NOLOHH_17230: cdgI - putative diguanylate cyclase CdgI, at 3,380,062 to 3,381,537 cdgI NOLOHH_17235: yeaH - UPF0229 protein YeaH, at 3,381,684 to 3,382,967 yeaH Position (kb) 3380 3381 3382Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3379.565 kb on - strand, within dgcJat 3379.723 kb on - strand, within dgcJat 3379.760 kb on + strandat 3379.769 kb on + strandat 3380.068 kb on - strandat 3380.152 kb on - strandat 3380.152 kb on - strandat 3380.214 kb on - strand, within cdgIat 3380.816 kb on + strand, within cdgIat 3382.116 kb on - strand, within yeaH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
remove
3,379,565 - dgcJ NOLOHH_17225 0.79 -0.5
3,379,723 - dgcJ NOLOHH_17225 0.89 -0.4
3,379,760 + +2.4
3,379,769 + -3.2
3,380,068 - +2.2
3,380,152 - -1.6
3,380,152 - +0.9
3,380,214 - cdgI NOLOHH_17230 0.10 -0.9
3,380,816 + cdgI NOLOHH_17230 0.51 -1.7
3,382,116 - yeaH NOLOHH_17235 0.34 -3.3

Or see this region's nucleotide sequence