Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27635

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuidC and OKFHMN_27630 are separated by 14 nucleotidesOKFHMN_27630 and ydgA are separated by 44 nucleotidesydgA and manA are separated by 100 nucleotides OKFHMN_27625: uidC - glucuronide uptake porin UidC, at 5,317,950 to 5,318,978 uidC OKFHMN_27630: OKFHMN_27630 - Putative outer membrane porin protein, at 5,318,993 to 5,319,214 _27630 OKFHMN_27635: ydgA - Protein YdgA, at 5,319,259 to 5,320,767 ydgA OKFHMN_27640: manA - mannose-6-phosphate isomerase, at 5,320,868 to 5,322,043 manA Position (kb) 5319 5320 5321Strain fitness (log2 ratio) -2 -1 0 1 2at 5318.340 kb on + strand, within uidCat 5318.899 kb on + strandat 5319.051 kb on + strand, within OKFHMN_27630at 5319.353 kb on - strandat 5319.375 kb on - strandat 5319.827 kb on + strand, within ydgAat 5320.818 kb on - strandat 5320.837 kb on - strandat 5321.060 kb on - strand, within manA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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5,318,340 + uidC OKFHMN_27625 0.38 -1.2
5,318,899 + +0.1
5,319,051 + OKFHMN_27630 0.26 +2.7
5,319,353 - -0.9
5,319,375 - -1.5
5,319,827 + ydgA OKFHMN_27635 0.38 -1.4
5,320,818 - -2.7
5,320,837 - -2.7
5,321,060 - manA OKFHMN_27640 0.16 +1.1

Or see this region's nucleotide sequence