Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24900

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbeeE and OKFHMN_24900 are separated by 79 nucleotidesOKFHMN_24900 and OKFHMN_24905 are separated by 9 nucleotidesOKFHMN_24905 and OKFHMN_24910 overlap by 4 nucleotidesOKFHMN_24910 and OKFHMN_24915 overlap by 4 nucleotides OKFHMN_24895: beeE - phage portal protein, at 4,834,538 to 4,837,039 beeE OKFHMN_24900: OKFHMN_24900 - head-tail connector protein, at 4,837,119 to 4,837,445 _24900 OKFHMN_24905: OKFHMN_24905 - phage head closure protein, at 4,837,455 to 4,837,805 _24905 OKFHMN_24910: OKFHMN_24910 - phage portal protein, at 4,837,802 to 4,838,248 _24910 OKFHMN_24915: OKFHMN_24915 - DUF3168 domain-containing protein, at 4,838,245 to 4,838,589 _24915 Position (kb) 4837 4838Strain fitness (log2 ratio) -1 0 1at 4837.035 kb on + strandat 4837.035 kb on + strandat 4837.233 kb on + strand, within OKFHMN_24900

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,837,035 + -0.1
4,837,035 + +1.0
4,837,233 + OKFHMN_24900 0.35 -1.4

Or see this region's nucleotide sequence