Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_24885 and OKFHMN_24890 are separated by 44 nucleotides OKFHMN_24890 and beeE overlap by 55 nucleotides beeE and OKFHMN_24900 are separated by 79 nucleotides OKFHMN_24900 and OKFHMN_24905 are separated by 9 nucleotides OKFHMN_24905 and OKFHMN_24910 overlap by 4 nucleotides
OKFHMN_24885: OKFHMN_24885 - phage major capsid protein, at 4,832,389 to 4,834,326
_24885
OKFHMN_24890: OKFHMN_24890 - hypothetical protein, at 4,834,371 to 4,834,592
_24890
OKFHMN_24895: beeE - phage portal protein, at 4,834,538 to 4,837,039
beeE
OKFHMN_24900: OKFHMN_24900 - head-tail connector protein, at 4,837,119 to 4,837,445
_24900
OKFHMN_24905: OKFHMN_24905 - phage head closure protein, at 4,837,455 to 4,837,805
_24905
OKFHMN_24910: OKFHMN_24910 - phage portal protein, at 4,837,802 to 4,838,248
_24910
Position (kb) 4834
4835
4836
4837
4838 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4835.967 kb on + strand, within beeE at 4836.116 kb on - strand, within beeE at 4837.035 kb on + strand at 4837.035 kb on + strand at 4837.233 kb on + strand, within OKFHMN_24900
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,835,967 + beeE OKFHMN_24895 0.57 +0.4 4,836,116 - beeE OKFHMN_24895 0.63 -2.8 4,837,035 + -0.1 4,837,035 + +1.0 4,837,233 + OKFHMN_24900 0.35 -1.4
Or see this region's nucleotide sequence