Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycbX and zapC overlap by 4 nucleotides zapC and pyrD are separated by 173 nucleotides pyrD and OKFHMN_05300 are separated by 277 nucleotides OKFHMN_05300 and fimA are separated by 13 nucleotides
OKFHMN_05285: ycbX - 6-N-hydroxylaminopurine resistance protein YcbX, at 879,097 to 880,206
ycbX
OKFHMN_05290: zapC - cell division protein ZapC, at 880,203 to 880,745
zapC
OKFHMN_05295: pyrD - quinone-dependent dihydroorotate dehydrogenase, at 880,919 to 881,929
pyrD
OKFHMN_05300: OKFHMN_05300 - PapD-N domain-containing protein, at 882,207 to 882,728
_05300
OKFHMN_05305: fimA - fimbrial protein, at 882,742 to 883,305
fimA
Position (kb) 880
881
882 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 879.973 kb on - strand, within ycbX at 880.168 kb on - strand at 880.191 kb on + strand at 880.192 kb on - strand at 880.192 kb on - strand at 880.272 kb on - strand, within zapC at 880.665 kb on - strand, within zapC at 880.665 kb on - strand, within zapC at 880.894 kb on + strand at 880.924 kb on + strand at 881.132 kb on + strand, within pyrD at 881.192 kb on - strand, within pyrD at 881.229 kb on - strand, within pyrD at 881.559 kb on - strand, within pyrD at 881.647 kb on + strand, within pyrD at 881.926 kb on - strand at 881.970 kb on + strand at 882.175 kb on - strand at 882.179 kb on - strand at 882.194 kb on - strand at 882.194 kb on - strand at 882.218 kb on + strand at 882.219 kb on - strand at 882.271 kb on + strand, within OKFHMN_05300 at 882.282 kb on - strand, within OKFHMN_05300 at 882.330 kb on - strand, within OKFHMN_05300 at 882.330 kb on - strand, within OKFHMN_05300 at 882.491 kb on + strand, within OKFHMN_05300 at 882.492 kb on - strand, within OKFHMN_05300 at 882.600 kb on - strand, within OKFHMN_05300 at 882.615 kb on - strand, within OKFHMN_05300 at 882.615 kb on - strand, within OKFHMN_05300 at 882.833 kb on - strand, within fimA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 879,973 - ycbX OKFHMN_05285 0.79 -2.4 880,168 - +1.2 880,191 + -0.4 880,192 - +2.1 880,192 - +0.5 880,272 - zapC OKFHMN_05290 0.13 +1.0 880,665 - zapC OKFHMN_05290 0.85 -0.3 880,665 - zapC OKFHMN_05290 0.85 +0.6 880,894 + +0.2 880,924 + -3.3 881,132 + pyrD OKFHMN_05295 0.21 -3.4 881,192 - pyrD OKFHMN_05295 0.27 -4.0 881,229 - pyrD OKFHMN_05295 0.31 -3.2 881,559 - pyrD OKFHMN_05295 0.63 -2.7 881,647 + pyrD OKFHMN_05295 0.72 -3.2 881,926 - -4.2 881,970 + -2.2 882,175 - -1.7 882,179 - +0.2 882,194 - +0.5 882,194 - -0.1 882,218 + -0.3 882,219 - -1.3 882,271 + OKFHMN_05300 0.12 +0.5 882,282 - OKFHMN_05300 0.14 -0.4 882,330 - OKFHMN_05300 0.24 -0.6 882,330 - OKFHMN_05300 0.24 +0.4 882,491 + OKFHMN_05300 0.54 +0.3 882,492 - OKFHMN_05300 0.55 +0.4 882,600 - OKFHMN_05300 0.75 -0.1 882,615 - OKFHMN_05300 0.78 -0.7 882,615 - OKFHMN_05300 0.78 -0.0 882,833 - fimA OKFHMN_05305 0.16 +0.3
Or see this region's nucleotide sequence