Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04600

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntputP and OKFHMN_04600 are separated by 158 nucleotidesOKFHMN_04600 and putA are separated by 54 nucleotides OKFHMN_04595: putP - sodium/proline symporter PutP, at 757,101 to 758,609 putP OKFHMN_04600: OKFHMN_04600 - hypothetical protein, at 758,768 to 758,977 _04600 OKFHMN_04605: putA - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 759,032 to 762,994 putA Position (kb) 758 759Strain fitness (log2 ratio) -2 -1 0 1at 757.788 kb on - strand, within putPat 757.926 kb on - strand, within putPat 758.090 kb on - strand, within putPat 758.148 kb on - strand, within putPat 758.273 kb on - strand, within putPat 758.294 kb on + strand, within putPat 758.505 kb on - strandat 758.505 kb on - strandat 758.507 kb on - strandat 758.611 kb on + strandat 758.689 kb on - strandat 758.695 kb on + strandat 758.904 kb on - strand, within OKFHMN_04600at 758.981 kb on + strandat 759.083 kb on - strandat 759.085 kb on + strandat 759.126 kb on + strandat 759.355 kb on + strandat 759.356 kb on - strandat 759.700 kb on + strand, within putAat 759.881 kb on + strand, within putAat 759.929 kb on + strand, within putA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
757,788 - putP OKFHMN_04595 0.46 -0.2
757,926 - putP OKFHMN_04595 0.55 +0.3
758,090 - putP OKFHMN_04595 0.66 -1.8
758,148 - putP OKFHMN_04595 0.69 -0.1
758,273 - putP OKFHMN_04595 0.78 +0.2
758,294 + putP OKFHMN_04595 0.79 -0.7
758,505 - +0.8
758,505 - -0.7
758,507 - +0.7
758,611 + -1.3
758,689 - +0.2
758,695 + -0.4
758,904 - OKFHMN_04600 0.65 -1.2
758,981 + +0.8
759,083 - -0.2
759,085 + +0.4
759,126 + -0.3
759,355 + -0.1
759,356 - -2.0
759,700 + putA OKFHMN_04605 0.17 -0.0
759,881 + putA OKFHMN_04605 0.21 -0.3
759,929 + putA OKFHMN_04605 0.23 -0.3

Or see this region's nucleotide sequence