Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04435

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlolD and OKFHMN_04430 are separated by 10 nucleotidesOKFHMN_04430 and fabB overlap by 4 nucleotidesfabB and fabB are separated by 4 nucleotides OKFHMN_04425: lolD - lipoprotein-releasing system ATP-binding protein LolD, at 714,542 to 715,249 lolD OKFHMN_04430: OKFHMN_04430 - ATP-binding protein, at 715,260 to 716,213 _04430 OKFHMN_04435: fabB - beta-ketoacyl synthase, at 716,210 to 717,433 fabB OKFHMN_04440: fabB - beta-ketoacyl-ACP synthase, at 717,438 to 719,996 fabB Position (kb) 716 717 718Strain fitness (log2 ratio) -2 -1 0 1at 715.588 kb on - strand, within OKFHMN_04430at 715.657 kb on - strand, within OKFHMN_04430at 716.111 kb on + strand, within OKFHMN_04430at 716.112 kb on - strand, within OKFHMN_04430at 716.195 kb on - strandat 716.233 kb on + strandat 716.327 kb on - strandat 716.783 kb on - strand, within fabBat 717.296 kb on - strand, within fabBat 717.418 kb on + strandat 717.461 kb on - strandat 717.464 kb on - strandat 717.579 kb on + strandat 717.665 kb on - strandat 717.868 kb on + strand, within fabBat 717.869 kb on - strand, within fabBat 717.873 kb on - strand, within fabBat 718.278 kb on + strand, within fabBat 718.279 kb on - strand, within fabB

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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715,588 - OKFHMN_04430 0.34 +0.7
715,657 - OKFHMN_04430 0.42 +0.2
716,111 + OKFHMN_04430 0.89 +0.7
716,112 - OKFHMN_04430 0.89 -1.2
716,195 - +1.1
716,233 + +0.4
716,327 - -1.6
716,783 - fabB OKFHMN_04435 0.47 -2.3
717,296 - fabB OKFHMN_04435 0.89 +0.1
717,418 + -0.4
717,461 - +1.2
717,464 - -0.1
717,579 + +0.2
717,665 - +0.0
717,868 + fabB OKFHMN_04440 0.17 -0.6
717,869 - fabB OKFHMN_04440 0.17 -0.4
717,873 - fabB OKFHMN_04440 0.17 +0.6
718,278 + fabB OKFHMN_04440 0.33 +0.8
718,279 - fabB OKFHMN_04440 0.33 -0.2

Or see this region's nucleotide sequence