Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mcrA and OKFHMN_03235 are separated by 44 nucleotides OKFHMN_03235 and OKFHMN_03240 are separated by 222 nucleotides OKFHMN_03240 and OKFHMN_03245 are separated by 356 nucleotides OKFHMN_03245 and OKFHMN_03250 are separated by 23 nucleotides
OKFHMN_03230: mcrA - HNH endonuclease, at 514,279 to 514,644
mcrA
OKFHMN_03235: OKFHMN_03235 - hypothetical protein, at 514,689 to 514,778
_03235
OKFHMN_03240: OKFHMN_03240 - hypothetical protein, at 515,001 to 515,141
_03240
OKFHMN_03245: OKFHMN_03245 - hypothetical protein, at 515,498 to 515,722
_03245
OKFHMN_03250: OKFHMN_03250 - lysis protein, at 515,746 to 516,213
_03250
Position (kb) 515
516 Strain fitness (log2 ratio) -1
0
1 at 514.865 kb on + strand at 514.866 kb on - strand at 514.869 kb on + strand at 514.989 kb on - strand at 515.078 kb on - strand, within OKFHMN_03240 at 515.093 kb on - strand, within OKFHMN_03240 at 515.181 kb on - strand at 515.213 kb on - strand at 515.490 kb on - strand at 515.514 kb on - strand at 515.754 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 514,865 + -1.0 514,866 - +0.4 514,869 + -0.2 514,989 - +0.4 515,078 - OKFHMN_03240 0.55 -1.5 515,093 - OKFHMN_03240 0.65 -0.7 515,181 - -0.9 515,213 - -0.2 515,490 - +0.5 515,514 - +0.2 515,754 + +0.3
Or see this region's nucleotide sequence