Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00310 and NOLOHH_00315 overlap by 11 nucleotides NOLOHH_00315 and NOLOHH_00320 are separated by 2 nucleotides NOLOHH_00320 and NOLOHH_00325 are separated by 14 nucleotides NOLOHH_00325 and NOLOHH_00330 are separated by 11 nucleotides NOLOHH_00330 and NOLOHH_00335 are separated by 10 nucleotides NOLOHH_00335 and NOLOHH_00340 are separated by 9 nucleotides
NOLOHH_00310: NOLOHH_00310 - VirB8 domain-containing protein, at 11,265 to 11,954
_00310
NOLOHH_00315: NOLOHH_00315 - Cnjugal protein Pilx7, at 11,944 to 12,084
_00315
NOLOHH_00320: NOLOHH_00320 - hypothetical protein, at 12,087 to 12,302
_00320
NOLOHH_00325: NOLOHH_00325 - conjugal transfer protein TrbL, at 12,317 to 13,375
_00325
NOLOHH_00330: NOLOHH_00330 - Eex protein, at 13,387 to 13,611
_00330
NOLOHH_00335: NOLOHH_00335 - type IV secretion system protein VirB5, at 13,622 to 14,329
_00335
NOLOHH_00340: NOLOHH_00340 - ATPase, at 14,339 to 17,074
_00340
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1 at 11.379 kb on - strand, within NOLOHH_00310 at 11.379 kb on - strand, within NOLOHH_00310 at 11.381 kb on + strand, within NOLOHH_00310 at 11.556 kb on - strand, within NOLOHH_00310 at 11.586 kb on - strand, within NOLOHH_00310 at 11.683 kb on - strand, within NOLOHH_00310 at 11.710 kb on - strand, within NOLOHH_00310 at 11.712 kb on - strand, within NOLOHH_00310 at 11.900 kb on + strand at 11.971 kb on - strand, within NOLOHH_00315 at 12.056 kb on - strand, within NOLOHH_00315 at 12.110 kb on + strand, within NOLOHH_00320 at 12.111 kb on - strand, within NOLOHH_00320 at 12.279 kb on + strand, within NOLOHH_00320 at 12.338 kb on + strand at 12.343 kb on + strand at 12.428 kb on + strand, within NOLOHH_00325 at 12.429 kb on - strand, within NOLOHH_00325 at 12.446 kb on - strand, within NOLOHH_00325 at 12.524 kb on - strand, within NOLOHH_00325 at 12.579 kb on - strand, within NOLOHH_00325 at 12.579 kb on - strand, within NOLOHH_00325 at 12.579 kb on - strand, within NOLOHH_00325 at 12.638 kb on + strand, within NOLOHH_00325 at 12.654 kb on - strand, within NOLOHH_00325 at 12.655 kb on + strand, within NOLOHH_00325 at 12.656 kb on - strand, within NOLOHH_00325 at 12.656 kb on - strand, within NOLOHH_00325 at 12.658 kb on - strand, within NOLOHH_00325 at 12.660 kb on - strand, within NOLOHH_00325 at 12.986 kb on - strand, within NOLOHH_00325 at 13.152 kb on - strand, within NOLOHH_00325 at 13.164 kb on - strand, within NOLOHH_00325 at 13.231 kb on - strand, within NOLOHH_00325 at 13.319 kb on - strand at 13.322 kb on - strand at 13.388 kb on + strand at 13.423 kb on - strand, within NOLOHH_00330 at 13.459 kb on - strand, within NOLOHH_00330 at 13.525 kb on - strand, within NOLOHH_00330 at 13.526 kb on + strand, within NOLOHH_00330 at 13.526 kb on + strand, within NOLOHH_00330 at 13.581 kb on + strand, within NOLOHH_00330 at 13.582 kb on - strand, within NOLOHH_00330 at 13.603 kb on + strand at 13.611 kb on + strand at 13.611 kb on + strand at 13.612 kb on - strand at 13.628 kb on + strand at 13.751 kb on + strand, within NOLOHH_00335 at 13.810 kb on + strand, within NOLOHH_00335 at 13.844 kb on - strand, within NOLOHH_00335 at 13.874 kb on + strand, within NOLOHH_00335 at 13.875 kb on - strand, within NOLOHH_00335 at 13.924 kb on + strand, within NOLOHH_00335 at 13.938 kb on + strand, within NOLOHH_00335 at 13.938 kb on + strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.093 kb on - strand, within NOLOHH_00335 at 14.093 kb on - strand, within NOLOHH_00335 at 14.116 kb on + strand, within NOLOHH_00335 at 14.117 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.176 kb on - strand, within NOLOHH_00335 at 14.240 kb on - strand, within NOLOHH_00335 at 14.359 kb on - strand at 14.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 11,379 - NOLOHH_00310 0.17 -2.4 11,379 - NOLOHH_00310 0.17 +0.6 11,381 + NOLOHH_00310 0.17 +0.6 11,556 - NOLOHH_00310 0.42 -1.3 11,586 - NOLOHH_00310 0.47 -0.2 11,683 - NOLOHH_00310 0.61 -0.9 11,710 - NOLOHH_00310 0.64 -1.1 11,712 - NOLOHH_00310 0.65 -0.0 11,900 + +0.8 11,971 - NOLOHH_00315 0.19 -0.3 12,056 - NOLOHH_00315 0.79 -0.1 12,110 + NOLOHH_00320 0.11 +0.7 12,111 - NOLOHH_00320 0.11 +0.1 12,279 + NOLOHH_00320 0.89 +0.0 12,338 + -1.0 12,343 + +0.9 12,428 + NOLOHH_00325 0.10 -0.1 12,429 - NOLOHH_00325 0.11 +0.4 12,446 - NOLOHH_00325 0.12 +0.9 12,524 - NOLOHH_00325 0.20 +0.9 12,579 - NOLOHH_00325 0.25 +0.6 12,579 - NOLOHH_00325 0.25 +0.7 12,579 - NOLOHH_00325 0.25 -0.1 12,638 + NOLOHH_00325 0.30 +0.4 12,654 - NOLOHH_00325 0.32 +0.1 12,655 + NOLOHH_00325 0.32 -0.9 12,656 - NOLOHH_00325 0.32 +0.2 12,656 - NOLOHH_00325 0.32 -0.5 12,658 - NOLOHH_00325 0.32 +0.4 12,660 - NOLOHH_00325 0.32 +0.8 12,986 - NOLOHH_00325 0.63 +0.1 13,152 - NOLOHH_00325 0.79 -0.3 13,164 - NOLOHH_00325 0.80 +0.3 13,231 - NOLOHH_00325 0.86 +0.1 13,319 - +0.3 13,322 - -0.9 13,388 + +0.1 13,423 - NOLOHH_00330 0.16 -0.4 13,459 - NOLOHH_00330 0.32 +0.2 13,525 - NOLOHH_00330 0.61 -0.5 13,526 + NOLOHH_00330 0.62 +1.5 13,526 + NOLOHH_00330 0.62 +0.4 13,581 + NOLOHH_00330 0.86 -0.7 13,582 - NOLOHH_00330 0.87 +0.5 13,603 + -0.4 13,611 + -0.1 13,611 + +0.1 13,612 - +0.7 13,628 + +0.7 13,751 + NOLOHH_00335 0.18 +0.5 13,810 + NOLOHH_00335 0.27 -0.3 13,844 - NOLOHH_00335 0.31 +0.8 13,874 + NOLOHH_00335 0.36 +1.0 13,875 - NOLOHH_00335 0.36 +0.1 13,924 + NOLOHH_00335 0.43 +1.5 13,938 + NOLOHH_00335 0.45 -0.2 13,938 + NOLOHH_00335 0.45 -0.2 13,939 - NOLOHH_00335 0.45 -2.7 13,939 - NOLOHH_00335 0.45 -0.8 13,939 - NOLOHH_00335 0.45 -0.1 14,029 + NOLOHH_00335 0.57 -0.2 14,029 + NOLOHH_00335 0.57 +0.3 14,029 + NOLOHH_00335 0.57 +0.1 14,092 + NOLOHH_00335 0.66 +1.0 14,092 + NOLOHH_00335 0.66 +1.2 14,092 + NOLOHH_00335 0.66 +0.7 14,093 - NOLOHH_00335 0.67 -0.1 14,093 - NOLOHH_00335 0.67 -0.6 14,116 + NOLOHH_00335 0.70 -0.1 14,117 - NOLOHH_00335 0.70 +0.1 14,155 - NOLOHH_00335 0.75 +0.4 14,155 - NOLOHH_00335 0.75 -0.4 14,155 - NOLOHH_00335 0.75 -0.4 14,176 - NOLOHH_00335 0.78 -0.3 14,240 - NOLOHH_00335 0.87 -0.9 14,359 - -0.1 14,359 - +1.2
Or see this region's nucleotide sequence