Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_14820 and OLJFJH_14825 overlap by 1 nucleotides OLJFJH_14825 and OLJFJH_14830 are separated by 12 nucleotides OLJFJH_14830 and OLJFJH_14835 are separated by 36 nucleotides
OLJFJH_14820: OLJFJH_14820 - type IVB secretion system protein IcmH/DotU, at 3,128,997 to 3,130,220
_14820
OLJFJH_14825: OLJFJH_14825 - type VI secretion system membrane subunit TssM, at 3,130,220 to 3,132,331
_14825
OLJFJH_14830: OLJFJH_14830 - type VI secretion system-associated protein TagF, at 3,132,344 to 3,133,042
_14830
OLJFJH_14835: OLJFJH_14835 - type VI secretion system-associated FHA domain protein TagH, at 3,133,079 to 3,134,251
_14835
Position (kb)
3130
3131
3132
3133 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7 at 3129.447 kb on - strand, within OLJFJH_14820 at 3129.527 kb on + strand, within OLJFJH_14820 at 3129.528 kb on - strand, within OLJFJH_14820 at 3129.595 kb on + strand, within OLJFJH_14820 at 3129.596 kb on - strand, within OLJFJH_14820 at 3129.603 kb on - strand, within OLJFJH_14820 at 3129.878 kb on + strand, within OLJFJH_14820 at 3129.958 kb on - strand, within OLJFJH_14820 at 3129.960 kb on - strand, within OLJFJH_14820 at 3130.008 kb on + strand, within OLJFJH_14820 at 3130.008 kb on + strand, within OLJFJH_14820 at 3130.009 kb on - strand, within OLJFJH_14820 at 3130.009 kb on - strand, within OLJFJH_14820 at 3130.070 kb on + strand, within OLJFJH_14820 at 3130.070 kb on + strand, within OLJFJH_14820 at 3130.071 kb on - strand, within OLJFJH_14820 at 3130.162 kb on + strand at 3130.162 kb on + strand at 3130.162 kb on + strand at 3130.245 kb on + strand at 3130.324 kb on - strand at 3130.324 kb on - strand at 3130.324 kb on - strand at 3130.399 kb on + strand at 3130.399 kb on + strand at 3130.400 kb on - strand at 3130.400 kb on - strand at 3130.404 kb on + strand at 3130.405 kb on - strand at 3130.439 kb on - strand, within OLJFJH_14825 at 3130.601 kb on + strand, within OLJFJH_14825 at 3130.601 kb on + strand, within OLJFJH_14825 at 3130.602 kb on - strand, within OLJFJH_14825 at 3130.608 kb on - strand, within OLJFJH_14825 at 3130.622 kb on + strand, within OLJFJH_14825 at 3130.623 kb on - strand, within OLJFJH_14825 at 3130.670 kb on - strand, within OLJFJH_14825 at 3130.759 kb on + strand, within OLJFJH_14825 at 3130.798 kb on + strand, within OLJFJH_14825 at 3130.798 kb on + strand, within OLJFJH_14825 at 3130.799 kb on - strand, within OLJFJH_14825 at 3130.849 kb on + strand, within OLJFJH_14825 at 3130.901 kb on - strand, within OLJFJH_14825 at 3130.901 kb on - strand, within OLJFJH_14825 at 3130.901 kb on - strand, within OLJFJH_14825 at 3131.047 kb on - strand, within OLJFJH_14825 at 3131.066 kb on + strand, within OLJFJH_14825 at 3131.637 kb on + strand, within OLJFJH_14825 at 3131.685 kb on - strand, within OLJFJH_14825 at 3131.685 kb on - strand, within OLJFJH_14825 at 3131.690 kb on - strand, within OLJFJH_14825 at 3131.690 kb on - strand, within OLJFJH_14825 at 3131.693 kb on - strand, within OLJFJH_14825 at 3131.803 kb on - strand, within OLJFJH_14825 at 3131.806 kb on + strand, within OLJFJH_14825 at 3131.807 kb on - strand, within OLJFJH_14825 at 3131.807 kb on - strand, within OLJFJH_14825 at 3131.807 kb on - strand, within OLJFJH_14825 at 3131.863 kb on + strand, within OLJFJH_14825 at 3131.863 kb on + strand, within OLJFJH_14825 at 3131.863 kb on + strand, within OLJFJH_14825 at 3131.863 kb on + strand, within OLJFJH_14825 at 3131.879 kb on + strand, within OLJFJH_14825 at 3131.965 kb on + strand, within OLJFJH_14825 at 3131.965 kb on + strand, within OLJFJH_14825 at 3132.016 kb on + strand, within OLJFJH_14825 at 3132.055 kb on + strand, within OLJFJH_14825 at 3132.055 kb on + strand, within OLJFJH_14825 at 3132.056 kb on - strand, within OLJFJH_14825 at 3132.060 kb on - strand, within OLJFJH_14825 at 3132.208 kb on + strand at 3132.229 kb on - strand at 3132.229 kb on - strand at 3132.298 kb on + strand at 3132.299 kb on - strand at 3132.299 kb on - strand at 3132.299 kb on - strand at 3132.299 kb on - strand at 3132.299 kb on - strand at 3132.329 kb on + strand at 3132.330 kb on - strand at 3132.340 kb on + strand at 3132.340 kb on + strand at 3132.341 kb on - strand at 3132.341 kb on - strand at 3132.553 kb on - strand, within OLJFJH_14830 at 3132.604 kb on + strand, within OLJFJH_14830 at 3132.605 kb on - strand, within OLJFJH_14830 at 3132.667 kb on + strand, within OLJFJH_14830 at 3132.668 kb on - strand, within OLJFJH_14830 at 3132.843 kb on + strand, within OLJFJH_14830 at 3132.884 kb on + strand, within OLJFJH_14830 at 3132.978 kb on + strand at 3133.041 kb on - strand at 3133.054 kb on + strand at 3133.205 kb on - strand, within OLJFJH_14835
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8 remove 3,129,447 - OLJFJH_14820 0.37 +1.0 3,129,527 + OLJFJH_14820 0.43 +1.3 3,129,528 - OLJFJH_14820 0.43 +0.5 3,129,595 + OLJFJH_14820 0.49 +0.1 3,129,596 - OLJFJH_14820 0.49 +1.4 3,129,603 - OLJFJH_14820 0.50 +1.3 3,129,878 + OLJFJH_14820 0.72 +1.3 3,129,958 - OLJFJH_14820 0.79 +1.2 3,129,960 - OLJFJH_14820 0.79 +1.4 3,130,008 + OLJFJH_14820 0.83 +1.2 3,130,008 + OLJFJH_14820 0.83 +1.6 3,130,009 - OLJFJH_14820 0.83 +0.7 3,130,009 - OLJFJH_14820 0.83 +2.1 3,130,070 + OLJFJH_14820 0.88 +0.7 3,130,070 + OLJFJH_14820 0.88 +3.1 3,130,071 - OLJFJH_14820 0.88 +0.8 3,130,162 + +0.1 3,130,162 + +3.2 3,130,162 + +2.2 3,130,245 + +1.0 3,130,324 - +2.2 3,130,324 - +1.5 3,130,324 - +2.0 3,130,399 + +1.4 3,130,399 + +0.9 3,130,400 - +1.0 3,130,400 - +3.4 3,130,404 + +0.7 3,130,405 - +1.6 3,130,439 - OLJFJH_14825 0.10 +0.7 3,130,601 + OLJFJH_14825 0.18 +1.3 3,130,601 + OLJFJH_14825 0.18 -0.1 3,130,602 - OLJFJH_14825 0.18 +2.4 3,130,608 - OLJFJH_14825 0.18 -0.5 3,130,622 + OLJFJH_14825 0.19 +2.1 3,130,623 - OLJFJH_14825 0.19 +2.3 3,130,670 - OLJFJH_14825 0.21 +2.0 3,130,759 + OLJFJH_14825 0.26 +1.6 3,130,798 + OLJFJH_14825 0.27 +4.5 3,130,798 + OLJFJH_14825 0.27 +0.3 3,130,799 - OLJFJH_14825 0.27 +3.6 3,130,849 + OLJFJH_14825 0.30 +3.1 3,130,901 - OLJFJH_14825 0.32 +2.1 3,130,901 - OLJFJH_14825 0.32 +1.5 3,130,901 - OLJFJH_14825 0.32 +2.2 3,131,047 - OLJFJH_14825 0.39 +1.4 3,131,066 + OLJFJH_14825 0.40 +2.2 3,131,637 + OLJFJH_14825 0.67 +1.2 3,131,685 - OLJFJH_14825 0.69 +2.7 3,131,685 - OLJFJH_14825 0.69 +0.3 3,131,690 - OLJFJH_14825 0.70 +2.7 3,131,690 - OLJFJH_14825 0.70 -0.1 3,131,693 - OLJFJH_14825 0.70 +3.0 3,131,803 - OLJFJH_14825 0.75 +1.3 3,131,806 + OLJFJH_14825 0.75 +2.3 3,131,807 - OLJFJH_14825 0.75 +1.1 3,131,807 - OLJFJH_14825 0.75 +3.6 3,131,807 - OLJFJH_14825 0.75 +1.8 3,131,863 + OLJFJH_14825 0.78 +1.4 3,131,863 + OLJFJH_14825 0.78 +0.8 3,131,863 + OLJFJH_14825 0.78 +1.5 3,131,863 + OLJFJH_14825 0.78 -1.2 3,131,879 + OLJFJH_14825 0.79 +0.5 3,131,965 + OLJFJH_14825 0.83 +0.9 3,131,965 + OLJFJH_14825 0.83 +0.8 3,132,016 + OLJFJH_14825 0.85 +2.9 3,132,055 + OLJFJH_14825 0.87 +2.1 3,132,055 + OLJFJH_14825 0.87 -0.3 3,132,056 - OLJFJH_14825 0.87 +7.3 3,132,060 - OLJFJH_14825 0.87 +1.9 3,132,208 + +1.7 3,132,229 - +1.9 3,132,229 - +1.6 3,132,298 + +0.6 3,132,299 - -0.5 3,132,299 - -0.7 3,132,299 - -1.0 3,132,299 - +0.8 3,132,299 - +0.3 3,132,329 + -0.0 3,132,330 - +1.2 3,132,340 + -0.1 3,132,340 + +1.4 3,132,341 - -0.8 3,132,341 - +0.3 3,132,553 - OLJFJH_14830 0.30 -0.4 3,132,604 + OLJFJH_14830 0.37 +1.2 3,132,605 - OLJFJH_14830 0.37 +0.6 3,132,667 + OLJFJH_14830 0.46 +0.3 3,132,668 - OLJFJH_14830 0.46 +3.5 3,132,843 + OLJFJH_14830 0.71 -0.3 3,132,884 + OLJFJH_14830 0.77 -1.6 3,132,978 + -1.0 3,133,041 - -0.0 3,133,054 + +0.4 3,133,205 - OLJFJH_14835 0.11 -1.2
Or see this region's nucleotide sequence