Strain Fitness in Erwinia amylovora T8 around OLJFJH_14825

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_14820 and OLJFJH_14825 overlap by 1 nucleotidesOLJFJH_14825 and OLJFJH_14830 are separated by 12 nucleotidesOLJFJH_14830 and OLJFJH_14835 are separated by 36 nucleotides OLJFJH_14820: OLJFJH_14820 - type IVB secretion system protein IcmH/DotU, at 3,128,997 to 3,130,220 _14820 OLJFJH_14825: OLJFJH_14825 - type VI secretion system membrane subunit TssM, at 3,130,220 to 3,132,331 _14825 OLJFJH_14830: OLJFJH_14830 - type VI secretion system-associated protein TagF, at 3,132,344 to 3,133,042 _14830 OLJFJH_14835: OLJFJH_14835 - type VI secretion system-associated FHA domain protein TagH, at 3,133,079 to 3,134,251 _14835 Position (kb) 3130 3131 3132 3133Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 3129.447 kb on - strand, within OLJFJH_14820at 3129.527 kb on + strand, within OLJFJH_14820at 3129.528 kb on - strand, within OLJFJH_14820at 3129.595 kb on + strand, within OLJFJH_14820at 3129.596 kb on - strand, within OLJFJH_14820at 3129.603 kb on - strand, within OLJFJH_14820at 3129.878 kb on + strand, within OLJFJH_14820at 3129.958 kb on - strand, within OLJFJH_14820at 3129.960 kb on - strand, within OLJFJH_14820at 3130.008 kb on + strand, within OLJFJH_14820at 3130.008 kb on + strand, within OLJFJH_14820at 3130.009 kb on - strand, within OLJFJH_14820at 3130.009 kb on - strand, within OLJFJH_14820at 3130.070 kb on + strand, within OLJFJH_14820at 3130.070 kb on + strand, within OLJFJH_14820at 3130.071 kb on - strand, within OLJFJH_14820at 3130.162 kb on + strandat 3130.162 kb on + strandat 3130.162 kb on + strandat 3130.245 kb on + strandat 3130.324 kb on - strandat 3130.324 kb on - strandat 3130.324 kb on - strandat 3130.399 kb on + strandat 3130.399 kb on + strandat 3130.400 kb on - strandat 3130.400 kb on - strandat 3130.404 kb on + strandat 3130.405 kb on - strandat 3130.439 kb on - strand, within OLJFJH_14825at 3130.601 kb on + strand, within OLJFJH_14825at 3130.601 kb on + strand, within OLJFJH_14825at 3130.602 kb on - strand, within OLJFJH_14825at 3130.608 kb on - strand, within OLJFJH_14825at 3130.622 kb on + strand, within OLJFJH_14825at 3130.623 kb on - strand, within OLJFJH_14825at 3130.670 kb on - strand, within OLJFJH_14825at 3130.759 kb on + strand, within OLJFJH_14825at 3130.798 kb on + strand, within OLJFJH_14825at 3130.798 kb on + strand, within OLJFJH_14825at 3130.799 kb on - strand, within OLJFJH_14825at 3130.849 kb on + strand, within OLJFJH_14825at 3130.901 kb on - strand, within OLJFJH_14825at 3130.901 kb on - strand, within OLJFJH_14825at 3130.901 kb on - strand, within OLJFJH_14825at 3131.047 kb on - strand, within OLJFJH_14825at 3131.066 kb on + strand, within OLJFJH_14825at 3131.637 kb on + strand, within OLJFJH_14825at 3131.685 kb on - strand, within OLJFJH_14825at 3131.685 kb on - strand, within OLJFJH_14825at 3131.690 kb on - strand, within OLJFJH_14825at 3131.690 kb on - strand, within OLJFJH_14825at 3131.693 kb on - strand, within OLJFJH_14825at 3131.803 kb on - strand, within OLJFJH_14825at 3131.806 kb on + strand, within OLJFJH_14825at 3131.807 kb on - strand, within OLJFJH_14825at 3131.807 kb on - strand, within OLJFJH_14825at 3131.807 kb on - strand, within OLJFJH_14825at 3131.863 kb on + strand, within OLJFJH_14825at 3131.863 kb on + strand, within OLJFJH_14825at 3131.863 kb on + strand, within OLJFJH_14825at 3131.863 kb on + strand, within OLJFJH_14825at 3131.879 kb on + strand, within OLJFJH_14825at 3131.965 kb on + strand, within OLJFJH_14825at 3131.965 kb on + strand, within OLJFJH_14825at 3132.016 kb on + strand, within OLJFJH_14825at 3132.055 kb on + strand, within OLJFJH_14825at 3132.055 kb on + strand, within OLJFJH_14825at 3132.056 kb on - strand, within OLJFJH_14825at 3132.060 kb on - strand, within OLJFJH_14825at 3132.208 kb on + strandat 3132.229 kb on - strandat 3132.229 kb on - strandat 3132.298 kb on + strandat 3132.299 kb on - strandat 3132.299 kb on - strandat 3132.299 kb on - strandat 3132.299 kb on - strandat 3132.299 kb on - strandat 3132.329 kb on + strandat 3132.330 kb on - strandat 3132.340 kb on + strandat 3132.340 kb on + strandat 3132.341 kb on - strandat 3132.341 kb on - strandat 3132.553 kb on - strand, within OLJFJH_14830at 3132.604 kb on + strand, within OLJFJH_14830at 3132.605 kb on - strand, within OLJFJH_14830at 3132.667 kb on + strand, within OLJFJH_14830at 3132.668 kb on - strand, within OLJFJH_14830at 3132.843 kb on + strand, within OLJFJH_14830at 3132.884 kb on + strand, within OLJFJH_14830at 3132.978 kb on + strandat 3133.041 kb on - strandat 3133.054 kb on + strandat 3133.205 kb on - strand, within OLJFJH_14835

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-8
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3,129,447 - OLJFJH_14820 0.37 +1.0
3,129,527 + OLJFJH_14820 0.43 +1.3
3,129,528 - OLJFJH_14820 0.43 +0.5
3,129,595 + OLJFJH_14820 0.49 +0.1
3,129,596 - OLJFJH_14820 0.49 +1.4
3,129,603 - OLJFJH_14820 0.50 +1.3
3,129,878 + OLJFJH_14820 0.72 +1.3
3,129,958 - OLJFJH_14820 0.79 +1.2
3,129,960 - OLJFJH_14820 0.79 +1.4
3,130,008 + OLJFJH_14820 0.83 +1.2
3,130,008 + OLJFJH_14820 0.83 +1.6
3,130,009 - OLJFJH_14820 0.83 +0.7
3,130,009 - OLJFJH_14820 0.83 +2.1
3,130,070 + OLJFJH_14820 0.88 +0.7
3,130,070 + OLJFJH_14820 0.88 +3.1
3,130,071 - OLJFJH_14820 0.88 +0.8
3,130,162 + +0.1
3,130,162 + +3.2
3,130,162 + +2.2
3,130,245 + +1.0
3,130,324 - +2.2
3,130,324 - +1.5
3,130,324 - +2.0
3,130,399 + +1.4
3,130,399 + +0.9
3,130,400 - +1.0
3,130,400 - +3.4
3,130,404 + +0.7
3,130,405 - +1.6
3,130,439 - OLJFJH_14825 0.10 +0.7
3,130,601 + OLJFJH_14825 0.18 +1.3
3,130,601 + OLJFJH_14825 0.18 -0.1
3,130,602 - OLJFJH_14825 0.18 +2.4
3,130,608 - OLJFJH_14825 0.18 -0.5
3,130,622 + OLJFJH_14825 0.19 +2.1
3,130,623 - OLJFJH_14825 0.19 +2.3
3,130,670 - OLJFJH_14825 0.21 +2.0
3,130,759 + OLJFJH_14825 0.26 +1.6
3,130,798 + OLJFJH_14825 0.27 +4.5
3,130,798 + OLJFJH_14825 0.27 +0.3
3,130,799 - OLJFJH_14825 0.27 +3.6
3,130,849 + OLJFJH_14825 0.30 +3.1
3,130,901 - OLJFJH_14825 0.32 +2.1
3,130,901 - OLJFJH_14825 0.32 +1.5
3,130,901 - OLJFJH_14825 0.32 +2.2
3,131,047 - OLJFJH_14825 0.39 +1.4
3,131,066 + OLJFJH_14825 0.40 +2.2
3,131,637 + OLJFJH_14825 0.67 +1.2
3,131,685 - OLJFJH_14825 0.69 +2.7
3,131,685 - OLJFJH_14825 0.69 +0.3
3,131,690 - OLJFJH_14825 0.70 +2.7
3,131,690 - OLJFJH_14825 0.70 -0.1
3,131,693 - OLJFJH_14825 0.70 +3.0
3,131,803 - OLJFJH_14825 0.75 +1.3
3,131,806 + OLJFJH_14825 0.75 +2.3
3,131,807 - OLJFJH_14825 0.75 +1.1
3,131,807 - OLJFJH_14825 0.75 +3.6
3,131,807 - OLJFJH_14825 0.75 +1.8
3,131,863 + OLJFJH_14825 0.78 +1.4
3,131,863 + OLJFJH_14825 0.78 +0.8
3,131,863 + OLJFJH_14825 0.78 +1.5
3,131,863 + OLJFJH_14825 0.78 -1.2
3,131,879 + OLJFJH_14825 0.79 +0.5
3,131,965 + OLJFJH_14825 0.83 +0.9
3,131,965 + OLJFJH_14825 0.83 +0.8
3,132,016 + OLJFJH_14825 0.85 +2.9
3,132,055 + OLJFJH_14825 0.87 +2.1
3,132,055 + OLJFJH_14825 0.87 -0.3
3,132,056 - OLJFJH_14825 0.87 +7.3
3,132,060 - OLJFJH_14825 0.87 +1.9
3,132,208 + +1.7
3,132,229 - +1.9
3,132,229 - +1.6
3,132,298 + +0.6
3,132,299 - -0.5
3,132,299 - -0.7
3,132,299 - -1.0
3,132,299 - +0.8
3,132,299 - +0.3
3,132,329 + -0.0
3,132,330 - +1.2
3,132,340 + -0.1
3,132,340 + +1.4
3,132,341 - -0.8
3,132,341 - +0.3
3,132,553 - OLJFJH_14830 0.30 -0.4
3,132,604 + OLJFJH_14830 0.37 +1.2
3,132,605 - OLJFJH_14830 0.37 +0.6
3,132,667 + OLJFJH_14830 0.46 +0.3
3,132,668 - OLJFJH_14830 0.46 +3.5
3,132,843 + OLJFJH_14830 0.71 -0.3
3,132,884 + OLJFJH_14830 0.77 -1.6
3,132,978 + -1.0
3,133,041 - -0.0
3,133,054 + +0.4
3,133,205 - OLJFJH_14835 0.11 -1.2

Or see this region's nucleotide sequence