Experiment: Palmitic 100 uM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0557 and Rv0558 are separated by 16 nucleotides Rv0558 and Rv0559c are separated by 13 nucleotides Rv0559c and Rv0560c are separated by 33 nucleotides Rv0560c and Rv0561c are separated by 24 nucleotides
Rv0557: Rv0557 - Mannosyltransferase MgtA, at 648,536 to 649,672
Rv0557
Rv0558: Rv0558 - Probable ubiquinone/menaquinone biosynthesis methyltransferase MenH (2-heptaprenyl-1,4-naphthoquinone methyltransferase), at 649,689 to 650,393
Rv0558
Rv0559c: Rv0559c - Possible conserved secreted protein, at 650,407 to 650,745
Rv0559c
Rv0560c: Rv0560c - Possible benzoquinone methyltransferase (methylase), at 650,779 to 651,504
Rv0560c
Rv0561c: Rv0561c - Possible oxidoreductase, at 651,529 to 652,755
Rv0561c
Position (kb) 650
651 Strain fitness (log2 ratio) -1
0
1
2
3 at 649.464 kb on + strand, within Rv0557 at 649.632 kb on - strand at 649.688 kb on + strand at 650.454 kb on - strand, within Rv0559c at 650.543 kb on + strand, within Rv0559c at 650.543 kb on + strand, within Rv0559c at 650.543 kb on + strand, within Rv0559c at 650.544 kb on - strand, within Rv0559c at 650.607 kb on - strand, within Rv0559c at 650.621 kb on + strand, within Rv0559c at 650.756 kb on - strand at 650.756 kb on - strand at 650.756 kb on - strand at 650.757 kb on + strand at 650.757 kb on + strand at 650.757 kb on + strand at 650.758 kb on - strand at 650.892 kb on - strand, within Rv0560c at 650.892 kb on - strand, within Rv0560c at 651.017 kb on + strand, within Rv0560c at 651.059 kb on + strand, within Rv0560c at 651.131 kb on + strand, within Rv0560c at 651.695 kb on - strand, within Rv0561c
Per-strain Table
Position Strand Gene LocusTag Fraction Palmitic 100 uM (C) remove 649,464 + Rv0557 0.82 -0.1 649,632 - -0.3 649,688 + +0.3 650,454 - Rv0559c 0.14 -0.6 650,543 + Rv0559c 0.40 -0.2 650,543 + Rv0559c 0.40 -0.3 650,543 + Rv0559c 0.40 +0.5 650,544 - Rv0559c 0.40 +2.9 650,607 - Rv0559c 0.59 -1.2 650,621 + Rv0559c 0.63 +0.5 650,756 - -0.6 650,756 - +0.0 650,756 - -0.5 650,757 + +0.1 650,757 + -1.1 650,757 + -0.4 650,758 - -0.2 650,892 - Rv0560c 0.16 -0.0 650,892 - Rv0560c 0.16 +2.3 651,017 + Rv0560c 0.33 +0.3 651,059 + Rv0560c 0.39 -0.8 651,131 + Rv0560c 0.48 -0.3 651,695 - Rv0561c 0.14 -1.6
Or see this region's nucleotide sequence