Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3188

Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dimethyl Sulfoxide 1 vol%
3,554,070	+				-0.4
3,554,160	+				-0.6
3,554,160	+				-1.1
3,554,160	+				+0.1
3,554,161	-				+1.9
3,554,192	+				-0.1
3,554,192	+				-0.9
3,554,392	+		Rv3188	0.27	-1.0
3,554,393	-		Rv3188	0.27	-0.4
3,554,505	-		Rv3188	0.59	-0.8
3,554,638	-				-0.2
3,554,638	-				-0.2
3,554,696	+				+0.3
3,554,696	+				-0.1
3,554,696	+				-0.0
3,554,696	+				+0.0
3,554,696	+				-0.5
3,554,697	-				-0.2
3,554,950	-		Rv3189	0.50	-0.8
3,554,950	-		Rv3189	0.50	-0.6
3,554,950	-		Rv3189	0.50	-0.2
3,554,984	+		Rv3189	0.55	+0.1
3,554,985	-		Rv3189	0.55	-0.7
3,555,156	+		Rv3189	0.83	+1.3
3,555,261	-				-0.3
3,555,287	-				-1.6
3,555,323	+				-0.3
3,555,324	-				-0.1
3,555,324	-				-0.1
3,555,324	-				-0.1
3,555,461	+				-0.1
3,555,532	-				-0.5
3,555,568	+		Rv3190c	0.12	-0.1
3,555,638	-		Rv3190c	0.17	-0.2