Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0591
Experiment: 7H9 with Dimethyl Sulfoxide 1 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 7H9 with Dimethyl Sulfoxide 1 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 688,235 | - | Rv0590 | 0.25 | -0.0 | |
| 688,235 | - | Rv0590 | 0.25 | -0.2 | |
| 688,937 | + | Rv0590A | 0.51 | -0.4 | |
| 688,938 | - | Rv0590A | 0.51 | +0.3 | |
| 689,011 | - | Rv0590A | 0.80 | -0.3 | |
| 689,178 | + | -0.1 | |||
| 689,183 | - | -0.3 | |||
| 689,183 | - | -0.2 | |||
| 689,448 | + | Rv0591 | 0.27 | -0.8 | |
| 690,413 | + | -0.4 | |||
| 690,413 | + | -0.3 | |||
| 690,413 | + | -1.0 | |||
| 690,493 | - | +0.4 | |||
| 690,493 | - | -0.2 | |||
| 690,654 | + | Rv0592 | 0.10 | +0.6 | |
| 690,772 | - | Rv0592 | 0.18 | -0.2 | |
| 690,865 | - | Rv0592 | 0.24 | +0.0 | |
| 691,153 | + | Rv0592 | 0.43 | +2.7 | |
| 691,364 | + | Rv0592 | 0.57 | +0.3 | |
| 691,365 | - | Rv0592 | 0.57 | +0.1 | |
| 691,449 | + | Rv0592 | 0.62 | -0.0 |
Or see this region's nucleotide sequence