Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06115 and SGL_RS06120 are separated by 163 nucleotides SGL_RS06120 and SGL_RS06125 are separated by 39 nucleotides SGL_RS06125 and SGL_RS06130 are separated by 6 nucleotides SGL_RS06130 and SGL_RS06135 are separated by 119 nucleotides
SGL_RS06115: SGL_RS06115 - DUF1868 domain-containing protein, at 907,050 to 907,826
_RS06115
SGL_RS06120: SGL_RS06120 - hypothetical protein, at 907,990 to 908,313
_RS06120
SGL_RS06125: SGL_RS06125 - triacylglycerol lipase, at 908,353 to 908,961
_RS06125
SGL_RS06130: SGL_RS06130 - anti-sigma regulatory factor, at 908,968 to 909,483
_RS06130
SGL_RS06135: SGL_RS06135 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 909,603 to 910,994
_RS06135
Position (kb) 908
909 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 907.353 kb on - strand, within SGL_RS06115 at 907.359 kb on - strand, within SGL_RS06115 at 907.364 kb on - strand, within SGL_RS06115 at 907.431 kb on + strand, within SGL_RS06115 at 907.464 kb on - strand, within SGL_RS06115 at 907.482 kb on + strand, within SGL_RS06115 at 907.557 kb on - strand, within SGL_RS06115 at 907.618 kb on - strand, within SGL_RS06115 at 907.629 kb on + strand, within SGL_RS06115 at 907.630 kb on + strand, within SGL_RS06115 at 907.745 kb on + strand, within SGL_RS06115 at 907.751 kb on - strand at 908.092 kb on - strand, within SGL_RS06120 at 908.135 kb on + strand, within SGL_RS06120 at 908.388 kb on + strand at 908.433 kb on - strand, within SGL_RS06125 at 908.527 kb on - strand, within SGL_RS06125 at 908.578 kb on + strand, within SGL_RS06125 at 908.606 kb on - strand, within SGL_RS06125 at 908.616 kb on - strand, within SGL_RS06125 at 908.629 kb on - strand, within SGL_RS06125 at 908.824 kb on + strand, within SGL_RS06125 at 908.843 kb on - strand, within SGL_RS06125 at 908.843 kb on - strand, within SGL_RS06125 at 908.850 kb on - strand, within SGL_RS06125 at 908.860 kb on - strand, within SGL_RS06125 at 908.928 kb on - strand at 909.200 kb on - strand, within SGL_RS06130 at 909.221 kb on + strand, within SGL_RS06130 at 909.226 kb on + strand, within SGL_RS06130 at 909.348 kb on - strand, within SGL_RS06130 at 909.354 kb on - strand, within SGL_RS06130 at 909.372 kb on - strand, within SGL_RS06130 at 909.495 kb on - strand at 909.519 kb on - strand at 909.579 kb on + strand at 909.606 kb on + strand at 909.669 kb on + strand at 909.733 kb on - strand at 909.797 kb on + strand, within SGL_RS06135 at 909.813 kb on - strand, within SGL_RS06135 at 909.831 kb on - strand, within SGL_RS06135 at 909.932 kb on + strand, within SGL_RS06135 at 909.934 kb on + strand, within SGL_RS06135 at 909.940 kb on - strand, within SGL_RS06135 at 909.940 kb on - strand, within SGL_RS06135
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 907,353 - SGL_RS06115 0.39 -2.0 907,359 - SGL_RS06115 0.40 -2.2 907,364 - SGL_RS06115 0.40 -2.1 907,431 + SGL_RS06115 0.49 -2.4 907,464 - SGL_RS06115 0.53 -3.7 907,482 + SGL_RS06115 0.56 -1.0 907,557 - SGL_RS06115 0.65 -1.6 907,618 - SGL_RS06115 0.73 -1.7 907,629 + SGL_RS06115 0.75 -2.5 907,630 + SGL_RS06115 0.75 -2.4 907,745 + SGL_RS06115 0.89 -2.4 907,751 - -3.0 908,092 - SGL_RS06120 0.31 +0.5 908,135 + SGL_RS06120 0.45 +0.6 908,388 + -0.7 908,433 - SGL_RS06125 0.13 +0.6 908,527 - SGL_RS06125 0.29 -0.0 908,578 + SGL_RS06125 0.37 +0.4 908,606 - SGL_RS06125 0.42 +0.1 908,616 - SGL_RS06125 0.43 -0.5 908,629 - SGL_RS06125 0.45 +0.3 908,824 + SGL_RS06125 0.77 -0.4 908,843 - SGL_RS06125 0.80 -0.7 908,843 - SGL_RS06125 0.80 -0.9 908,850 - SGL_RS06125 0.82 +0.6 908,860 - SGL_RS06125 0.83 +0.5 908,928 - +0.3 909,200 - SGL_RS06130 0.45 -4.6 909,221 + SGL_RS06130 0.49 -5.0 909,226 + SGL_RS06130 0.50 -3.1 909,348 - SGL_RS06130 0.74 -3.8 909,354 - SGL_RS06130 0.75 -3.2 909,372 - SGL_RS06130 0.78 -3.9 909,495 - -2.2 909,519 - -1.7 909,579 + -1.0 909,606 + +1.0 909,669 + +0.7 909,733 - +0.7 909,797 + SGL_RS06135 0.14 +0.9 909,813 - SGL_RS06135 0.15 +0.9 909,831 - SGL_RS06135 0.16 +0.6 909,932 + SGL_RS06135 0.24 +1.1 909,934 + SGL_RS06135 0.24 +0.6 909,940 - SGL_RS06135 0.24 +0.9 909,940 - SGL_RS06135 0.24 -0.1
Or see this region's nucleotide sequence