Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25645

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
58,247	+	pilO2	LU632_RS25640	0.30	-0.4
58,247	+	pilO2	LU632_RS25640	0.30	-1.5
58,348	+	pilO2	LU632_RS25640	0.38	-1.1
58,348	+	pilO2	LU632_RS25640	0.38	+1.2
58,348	+	pilO2	LU632_RS25640	0.38	-3.1
58,349	-	pilO2	LU632_RS25640	0.38	+3.2
58,349	-	pilO2	LU632_RS25640	0.38	-0.4
58,349	-	pilO2	LU632_RS25640	0.38	-2.6
58,349	-	pilO2	LU632_RS25640	0.38	-1.5
58,349	-	pilO2	LU632_RS25640	0.38	+2.0
58,349	-	pilO2	LU632_RS25640	0.38	-2.2
58,349	-	pilO2	LU632_RS25640	0.38	+1.4
58,349	-	pilO2	LU632_RS25640	0.38	-0.7
58,349	-	pilO2	LU632_RS25640	0.38	-0.3
58,415	+	pilO2	LU632_RS25640	0.43	-1.4
58,415	+	pilO2	LU632_RS25640	0.43	-1.9
58,415	+	pilO2	LU632_RS25640	0.43	-1.8
58,416	-	pilO2	LU632_RS25640	0.43	-1.7
58,416	-	pilO2	LU632_RS25640	0.43	-0.9
58,416	-	pilO2	LU632_RS25640	0.43	-0.8
58,416	-	pilO2	LU632_RS25640	0.43	-0.9
58,443	-	pilO2	LU632_RS25640	0.45	+1.3
58,473	+	pilO2	LU632_RS25640	0.48	-0.4
58,474	-	pilO2	LU632_RS25640	0.48	+1.3
58,501	+	pilO2	LU632_RS25640	0.50	+0.7
58,502	-	pilO2	LU632_RS25640	0.50	-1.4
58,502	-	pilO2	LU632_RS25640	0.50	-0.5
58,554	-	pilO2	LU632_RS25640	0.54	+1.2
58,829	-	pilO2	LU632_RS25640	0.75	+1.2
58,829	-	pilO2	LU632_RS25640	0.75	-1.8
58,900	-	pilO2	LU632_RS25640	0.81	-2.1
58,948	+	pilO2	LU632_RS25640	0.84	+0.2
58,948	+	pilO2	LU632_RS25640	0.84	-0.8
58,949	-	pilO2	LU632_RS25640	0.84	+0.1
59,003	+	pilO2	LU632_RS25640	0.89	-1.3
59,003	+	pilO2	LU632_RS25640	0.89	-1.4
59,068	+				+3.8
59,069	-				+0.7
59,116	-				-0.6
59,116	-				-0.3
59,136	+				-1.9
59,301	+	pilP	LU632_RS25645	0.29	-1.4
59,302	-	pilP	LU632_RS25645	0.29	+0.4
59,334	+	pilP	LU632_RS25645	0.35	-3.0
59,704	+				-0.8
59,704	+				+0.8
59,713	+				+0.2
59,714	-				-0.6
59,719	+				-1.4
59,719	+				+0.6
59,811	+				-2.1
59,811	+				+0.3
59,811	+				+1.4
59,811	+				+0.7
59,811	+				+1.0
59,811	+				+2.1
59,812	-				+3.6
59,812	-				+0.2
59,812	-				-0.1
59,870	-	tadA	LU632_RS25650	0.11	-1.7
59,929	+	tadA	LU632_RS25650	0.15	-1.4
59,929	+	tadA	LU632_RS25650	0.15	+2.0
59,929	+	tadA	LU632_RS25650	0.15	-1.8
60,005	-	tadA	LU632_RS25650	0.20	+2.5
60,018	+	tadA	LU632_RS25650	0.21	-1.3
60,018	+	tadA	LU632_RS25650	0.21	-2.6
60,019	-	tadA	LU632_RS25650	0.21	+1.3
60,186	-	tadA	LU632_RS25650	0.32	+0.9
60,238	+	tadA	LU632_RS25650	0.35	-1.4
60,239	-	tadA	LU632_RS25650	0.35	-2.7
60,260	+	tadA	LU632_RS25650	0.37	-0.8
60,260	+	tadA	LU632_RS25650	0.37	+1.8
60,260	+	tadA	LU632_RS25650	0.37	-0.0
60,260	+	tadA	LU632_RS25650	0.37	+0.7
60,260	+	tadA	LU632_RS25650	0.37	-1.1
60,261	-	tadA	LU632_RS25650	0.37	+0.1
60,264	+	tadA	LU632_RS25650	0.37	+0.2
60,265	-	tadA	LU632_RS25650	0.37	-2.1
60,313	+	tadA	LU632_RS25650	0.40	+0.5
60,313	+	tadA	LU632_RS25650	0.40	-3.5
60,433	+	tadA	LU632_RS25650	0.48	-0.5
60,433	+	tadA	LU632_RS25650	0.48	+1.0
60,434	-	tadA	LU632_RS25650	0.48	-2.2
60,444	-	tadA	LU632_RS25650	0.49	+0.8
60,444	-	tadA	LU632_RS25650	0.49	-1.3
60,444	-	tadA	LU632_RS25650	0.49	-1.1
60,520	-	tadA	LU632_RS25650	0.54	+0.2
60,562	-	tadA	LU632_RS25650	0.57	-2.1
60,603	+	tadA	LU632_RS25650	0.60	-0.2