Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19665

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,734,967	-	cytR	LU632_RS19660	0.22	-1.1
3,734,992	+	cytR	LU632_RS19660	0.24	-0.6
3,734,993	-	cytR	LU632_RS19660	0.24	+0.9
3,734,995	+	cytR	LU632_RS19660	0.25	+3.1
3,735,091	+	cytR	LU632_RS19660	0.34	+1.1
3,735,092	-	cytR	LU632_RS19660	0.34	-0.2
3,735,324	-	cytR	LU632_RS19660	0.56	-1.6
3,735,324	-	cytR	LU632_RS19660	0.56	-0.7
3,735,354	+	cytR	LU632_RS19660	0.59	-2.0
3,735,355	-	cytR	LU632_RS19660	0.59	-1.4
3,735,355	-	cytR	LU632_RS19660	0.59	+0.7
3,735,399	+	cytR	LU632_RS19660	0.64	+1.3
3,735,399	+	cytR	LU632_RS19660	0.64	-0.3
3,735,399	+	cytR	LU632_RS19660	0.64	+0.4
3,735,400	-	cytR	LU632_RS19660	0.64	+0.4
3,735,401	+	cytR	LU632_RS19660	0.64	-0.5
3,735,401	+	cytR	LU632_RS19660	0.64	-1.9
3,735,401	+	cytR	LU632_RS19660	0.64	-0.2
3,735,454	+	cytR	LU632_RS19660	0.69	-1.5
3,735,454	+	cytR	LU632_RS19660	0.69	+0.7
3,735,455	-	cytR	LU632_RS19660	0.69	+2.1
3,735,585	-	cytR	LU632_RS19660	0.82	-0.8
3,735,732	-				-0.9
3,735,826	+				+0.4
3,735,827	-				-0.2
3,735,932	+				+0.7
3,736,336	+	ftsN	LU632_RS19665	0.43	-2.3
3,736,336	+	ftsN	LU632_RS19665	0.43	+0.0
3,736,336	+	ftsN	LU632_RS19665	0.43	-1.3
3,736,337	-	ftsN	LU632_RS19665	0.44	-3.6
3,736,337	-	ftsN	LU632_RS19665	0.44	-2.6
3,736,493	+	ftsN	LU632_RS19665	0.61	+0.7
3,736,493	+	ftsN	LU632_RS19665	0.61	-0.8
3,736,573	+	ftsN	LU632_RS19665	0.70	-2.8
3,736,630	+	ftsN	LU632_RS19665	0.76	-0.3
3,736,630	+	ftsN	LU632_RS19665	0.76	-0.5
3,736,630	+	ftsN	LU632_RS19665	0.76	+0.2
3,736,710	-	ftsN	LU632_RS19665	0.85	-0.9
3,736,949	+				-1.6
3,736,973	+				-2.5
3,737,050	+	hslV	LU632_RS19670	0.21	-0.9
3,737,050	+	hslV	LU632_RS19670	0.21	-3.4
3,737,051	-	hslV	LU632_RS19670	0.22	-0.2
3,737,052	+	hslV	LU632_RS19670	0.22	-0.1
3,737,125	-	hslV	LU632_RS19670	0.36	-1.1
3,737,125	-	hslV	LU632_RS19670	0.36	-0.3
3,737,254	-	hslV	LU632_RS19670	0.60	+1.1
3,737,321	-	hslV	LU632_RS19670	0.73	-0.6
3,737,409	+	hslV	LU632_RS19670	0.89	-1.2
3,737,419	+				+1.2
3,737,419	+				+1.6
3,737,419	+				+0.7
3,737,419	+				-1.6
3,737,420	-				+1.2
3,737,420	-				+0.7
3,737,458	-				+1.1
3,737,472	+				+0.7
3,737,472	+				-0.9
3,737,473	-				+1.1
3,737,473	-				+0.7
3,737,473	-				+0.3
3,737,476	+				-1.1
3,737,476	+				+0.7
3,737,477	-				-2.6
3,737,477	-				+0.2
3,737,477	-				-2.6
3,737,477	-				+4.0
3,737,734	+	hslU	LU632_RS19675	0.19	+0.8
3,737,747	+	hslU	LU632_RS19675	0.20	-0.7