Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18295

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
3,455,349	+		LU632_RS18285	0.74	-0.8
3,455,350	-		LU632_RS18285	0.74	-0.5
3,455,471	-		LU632_RS18285	0.80	-1.7
3,455,495	+		LU632_RS18285	0.82	+0.6
3,455,518	+		LU632_RS18285	0.83	-2.3
3,455,519	-		LU632_RS18285	0.83	-2.9
3,455,595	-		LU632_RS18285	0.87	-1.5
3,455,600	-		LU632_RS18285	0.88	-2.8
3,455,607	-		LU632_RS18285	0.88	-2.3
3,455,728	+				+1.8
3,455,728	+				+0.9
3,455,798	-				+0.7
3,455,798	-				-1.7
3,455,798	-				+2.5
3,455,821	-				+0.2
3,455,871	+				+0.1
3,455,888	-		LU632_RS18290	0.14	+2.2
3,455,915	-		LU632_RS18290	0.24	+1.9
3,456,054	+		LU632_RS18290	0.76	-1.5
3,456,055	-		LU632_RS18290	0.76	+0.5
3,456,055	-		LU632_RS18290	0.76	+1.2
3,456,114	-				+1.1
3,456,141	-				-0.3
3,456,152	-				-2.8
3,456,155	-				-1.0
3,456,293	+				-0.2
3,456,496	-		LU632_RS18295	0.79	-1.0
3,456,609	+				-0.9
3,456,643	-		LU632_RS18300	0.14	+0.4
3,456,668	-		LU632_RS18300	0.37	+0.6
3,456,668	-		LU632_RS18300	0.37	+1.0
3,456,705	+		LU632_RS18300	0.70	+1.2
3,456,763	+				+0.1
3,456,769	-				+2.9
3,456,798	-				+1.1
3,456,807	-				-1.8
3,456,848	+				+0.7
3,456,902	+				-0.9
3,456,945	+				+1.4
3,456,947	+				-0.6
3,457,044	+				+0.6
3,457,111	+		LU632_RS18305	0.17	+1.0
3,457,112	-		LU632_RS18305	0.17	-1.1
3,457,164	+		LU632_RS18305	0.22	-0.3
3,457,164	+		LU632_RS18305	0.22	-0.6
3,457,165	-		LU632_RS18305	0.22	+0.6
3,457,165	-		LU632_RS18305	0.22	+1.1
3,457,250	+		LU632_RS18305	0.31	+2.8
3,457,268	-		LU632_RS18305	0.32	+0.3
3,457,370	-		LU632_RS18305	0.43	-1.3
3,457,392	+		LU632_RS18305	0.45	-1.8
3,457,400	+		LU632_RS18305	0.46	+1.0
3,457,400	+		LU632_RS18305	0.46	+3.7
3,457,406	+		LU632_RS18305	0.46	-0.5
3,457,406	+		LU632_RS18305	0.46	-0.0
3,457,406	+		LU632_RS18305	0.46	-2.5
3,457,409	+		LU632_RS18305	0.46	-0.8
3,457,545	-		LU632_RS18305	0.60	-1.3
3,457,545	-		LU632_RS18305	0.60	-1.0