Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16850

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS16845 and LU632_RS16850 are separated by 307 nucleotidesLU632_RS16850 and LU632_RS16855 are separated by 104 nucleotides LU632_RS16845: LU632_RS16845 - IS91 family transposase, at 3,173,700 to 3,174,923 _RS16845 LU632_RS16850: LU632_RS16850 - MFS transporter, at 3,175,231 to 3,175,425 _RS16850 LU632_RS16855: LU632_RS16855 - helix-turn-helix domain-containing protein, at 3,175,530 to 3,176,548 _RS16855 Position (kb) 3175 3176Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3175.059 kb on + strandat 3175.106 kb on + strandat 3175.107 kb on - strandat 3175.317 kb on + strand, within LU632_RS16850at 3175.317 kb on + strand, within LU632_RS16850at 3175.317 kb on + strand, within LU632_RS16850at 3175.318 kb on - strand, within LU632_RS16850at 3175.318 kb on - strand, within LU632_RS16850at 3175.371 kb on - strand, within LU632_RS16850at 3176.388 kb on - strand, within LU632_RS16855

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
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3,175,059 + +3.7
3,175,106 + -0.1
3,175,107 - -0.5
3,175,317 + LU632_RS16850 0.44 -1.2
3,175,317 + LU632_RS16850 0.44 -2.0
3,175,317 + LU632_RS16850 0.44 -0.1
3,175,318 - LU632_RS16850 0.45 -1.5
3,175,318 - LU632_RS16850 0.45 -1.8
3,175,371 - LU632_RS16850 0.72 -2.0
3,176,388 - LU632_RS16855 0.84 +1.0

Or see this region's nucleotide sequence