Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09015 and LU632_RS09020 overlap by 4 nucleotides LU632_RS09020 and LU632_RS09025 are separated by 17 nucleotides LU632_RS09025 and LU632_RS09030 are separated by 367 nucleotides LU632_RS09030 and LU632_RS09035 are separated by 512 nucleotides LU632_RS09035 and LU632_RS09040 overlap by 1 nucleotides
LU632_RS09015: LU632_RS09015 - hypothetical protein, at 1,699,627 to 1,700,169
_RS09015
LU632_RS09020: LU632_RS09020 - hypothetical protein, at 1,700,166 to 1,700,426
_RS09020
LU632_RS09025: LU632_RS09025 - XRE family transcriptional regulator, at 1,700,444 to 1,700,674
_RS09025
LU632_RS09030: LU632_RS09030 - hypothetical protein, at 1,701,042 to 1,701,254
_RS09030
LU632_RS09035: LU632_RS09035 - type II toxin-antitoxin system CcdA family antitoxin, at 1,701,767 to 1,702,012
_RS09035
LU632_RS09040: LU632_RS09040 - CcdB family protein, at 1,702,012 to 1,702,329
_RS09040
Position (kb) 1701
1702 Strain fitness (log2 ratio) -2
-1
0
1 at 1700.089 kb on + strand, within LU632_RS09015 at 1700.188 kb on - strand at 1700.424 kb on + strand at 1700.424 kb on + strand at 1700.517 kb on + strand, within LU632_RS09025 at 1701.067 kb on - strand, within LU632_RS09030 at 1701.131 kb on + strand, within LU632_RS09030 at 1701.295 kb on + strand at 1701.480 kb on + strand at 1701.480 kb on + strand at 1701.481 kb on - strand at 1701.510 kb on + strand at 1701.624 kb on - strand at 1702.141 kb on - strand, within LU632_RS09040 at 1702.146 kb on + strand, within LU632_RS09040 at 1702.203 kb on + strand, within LU632_RS09040 at 1702.216 kb on - strand, within LU632_RS09040
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 1,700,089 + LU632_RS09015 0.85 -0.8 1,700,188 - -1.5 1,700,424 + -1.2 1,700,424 + -1.5 1,700,517 + LU632_RS09025 0.32 -1.7 1,701,067 - LU632_RS09030 0.12 -0.9 1,701,131 + LU632_RS09030 0.42 -1.3 1,701,295 + -2.4 1,701,480 + -2.7 1,701,480 + +0.6 1,701,481 - -2.0 1,701,510 + -0.2 1,701,624 - +0.9 1,702,141 - LU632_RS09040 0.41 -0.1 1,702,146 + LU632_RS09040 0.42 -2.1 1,702,203 + LU632_RS09040 0.60 +0.2 1,702,216 - LU632_RS09040 0.64 -0.8
Or see this region's nucleotide sequence