Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt folA and carB are separated by 571 nucleotides carB and carA are separated by 14 nucleotides
LU632_RS02745: folA - type 3 dihydrofolate reductase, at 552,418 to 552,897
folA
LU632_RS02750: carB - carbamoyl-phosphate synthase large subunit, at 553,469 to 556,693
carB
LU632_RS02755: carA - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 556,708 to 557,853
carA
Position (kb) 553
554
555
556
557 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 552.961 kb on + strand at 552.962 kb on - strand at 552.979 kb on + strand at 552.980 kb on - strand at 552.980 kb on - strand at 552.984 kb on - strand at 553.011 kb on - strand at 553.028 kb on + strand at 553.029 kb on - strand at 553.134 kb on + strand at 553.135 kb on - strand at 553.138 kb on + strand at 553.147 kb on + strand at 553.225 kb on + strand at 553.225 kb on + strand at 553.226 kb on - strand at 553.257 kb on - strand at 553.282 kb on + strand at 553.283 kb on - strand at 553.357 kb on - strand at 553.403 kb on + strand at 553.419 kb on - strand at 553.460 kb on + strand at 553.460 kb on + strand at 553.460 kb on + strand at 553.461 kb on - strand at 553.540 kb on + strand at 553.540 kb on + strand at 553.541 kb on - strand at 553.541 kb on - strand at 553.541 kb on - strand at 553.541 kb on - strand at 553.585 kb on + strand at 553.585 kb on + strand at 553.585 kb on + strand at 553.585 kb on + strand at 553.585 kb on + strand at 553.588 kb on - strand at 553.652 kb on - strand at 553.657 kb on + strand at 553.657 kb on + strand at 553.657 kb on + strand at 553.657 kb on + strand at 553.657 kb on + strand at 553.658 kb on - strand at 553.658 kb on - strand at 553.659 kb on + strand at 553.659 kb on + strand at 553.659 kb on + strand at 553.666 kb on - strand at 553.712 kb on + strand at 553.713 kb on - strand at 553.834 kb on + strand, within carB at 553.879 kb on + strand, within carB at 553.882 kb on + strand, within carB at 553.883 kb on - strand, within carB at 553.883 kb on - strand, within carB at 554.015 kb on + strand, within carB at 554.015 kb on + strand, within carB at 554.016 kb on - strand, within carB at 554.016 kb on - strand, within carB at 554.031 kb on + strand, within carB at 554.034 kb on + strand, within carB at 554.045 kb on - strand, within carB at 554.080 kb on + strand, within carB at 554.181 kb on + strand, within carB at 554.182 kb on - strand, within carB at 554.299 kb on - strand, within carB at 554.350 kb on + strand, within carB at 554.509 kb on - strand, within carB at 554.541 kb on + strand, within carB at 554.541 kb on + strand, within carB at 554.542 kb on - strand, within carB at 554.860 kb on + strand, within carB at 554.873 kb on - strand, within carB at 554.890 kb on + strand, within carB at 555.008 kb on + strand, within carB at 555.009 kb on - strand, within carB at 555.063 kb on + strand, within carB at 555.063 kb on + strand, within carB at 555.063 kb on + strand, within carB at 555.063 kb on + strand, within carB at 555.064 kb on - strand, within carB at 555.067 kb on + strand, within carB at 555.067 kb on + strand, within carB at 555.067 kb on + strand, within carB at 555.067 kb on + strand, within carB at 555.067 kb on + strand, within carB at 555.067 kb on + strand, within carB at 555.067 kb on + strand, within carB at 555.068 kb on - strand, within carB at 555.068 kb on - strand, within carB at 555.068 kb on - strand, within carB at 555.068 kb on - strand, within carB at 555.068 kb on - strand, within carB at 555.068 kb on - strand, within carB at 555.068 kb on - strand, within carB at 555.068 kb on - strand, within carB at 555.136 kb on - strand, within carB at 555.212 kb on - strand, within carB at 555.338 kb on + strand, within carB at 555.339 kb on - strand, within carB at 555.633 kb on + strand, within carB at 555.633 kb on + strand, within carB at 555.634 kb on - strand, within carB at 555.913 kb on - strand, within carB at 555.950 kb on - strand, within carB at 556.146 kb on + strand, within carB at 556.147 kb on - strand, within carB at 556.147 kb on - strand, within carB at 556.355 kb on + strand, within carB at 556.355 kb on + strand, within carB at 556.355 kb on + strand, within carB at 556.356 kb on - strand, within carB at 556.468 kb on + strand at 556.499 kb on - strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.553 kb on - strand at 556.591 kb on + strand at 556.611 kb on + strand at 556.673 kb on + strand at 556.674 kb on - strand at 556.681 kb on + strand at 556.709 kb on + strand at 556.840 kb on - strand, within carA at 556.840 kb on - strand, within carA at 556.869 kb on + strand, within carA at 556.869 kb on + strand, within carA at 556.870 kb on - strand, within carA at 556.947 kb on + strand, within carA at 556.947 kb on + strand, within carA at 556.950 kb on + strand, within carA at 557.108 kb on + strand, within carA at 557.108 kb on + strand, within carA at 557.108 kb on + strand, within carA at 557.236 kb on - strand, within carA at 557.247 kb on + strand, within carA at 557.248 kb on - strand, within carA at 557.273 kb on - strand, within carA at 557.458 kb on - strand, within carA at 557.518 kb on - strand, within carA at 557.518 kb on - strand, within carA at 557.526 kb on + strand, within carA at 557.526 kb on + strand, within carA at 557.527 kb on - strand, within carA at 557.552 kb on + strand, within carA at 557.611 kb on - strand, within carA at 557.685 kb on - strand, within carA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 552,961 + +0.2 552,962 - +0.4 552,979 + -1.5 552,980 - -0.3 552,980 - +2.2 552,984 - +0.2 553,011 - -0.2 553,028 + -1.4 553,029 - -0.9 553,134 + +1.4 553,135 - -2.1 553,138 + -0.1 553,147 + +0.6 553,225 + -0.6 553,225 + -1.2 553,226 - +0.8 553,257 - +2.9 553,282 + +0.2 553,283 - +0.4 553,357 - -2.0 553,403 + +0.8 553,419 - -1.3 553,460 + -1.2 553,460 + +0.8 553,460 + +3.5 553,461 - -1.3 553,540 + -0.1 553,540 + -0.4 553,541 - -1.3 553,541 - +0.2 553,541 - +0.8 553,541 - -1.9 553,585 + -0.0 553,585 + -2.1 553,585 + +1.8 553,585 + -2.5 553,585 + -3.3 553,588 - -1.5 553,652 - -1.0 553,657 + -2.3 553,657 + -0.8 553,657 + -0.6 553,657 + +0.8 553,657 + -4.0 553,658 - -1.3 553,658 - -2.0 553,659 + -2.0 553,659 + -2.2 553,659 + -1.4 553,666 - -0.5 553,712 + -2.0 553,713 - -2.1 553,834 + carB LU632_RS02750 0.11 -3.4 553,879 + carB LU632_RS02750 0.13 -1.2 553,882 + carB LU632_RS02750 0.13 -1.2 553,883 - carB LU632_RS02750 0.13 -2.4 553,883 - carB LU632_RS02750 0.13 -4.2 554,015 + carB LU632_RS02750 0.17 -1.6 554,015 + carB LU632_RS02750 0.17 -4.0 554,016 - carB LU632_RS02750 0.17 -0.8 554,016 - carB LU632_RS02750 0.17 -1.2 554,031 + carB LU632_RS02750 0.17 -2.5 554,034 + carB LU632_RS02750 0.18 -2.2 554,045 - carB LU632_RS02750 0.18 -2.3 554,080 + carB LU632_RS02750 0.19 -2.3 554,181 + carB LU632_RS02750 0.22 -0.2 554,182 - carB LU632_RS02750 0.22 -1.1 554,299 - carB LU632_RS02750 0.26 -0.8 554,350 + carB LU632_RS02750 0.27 -0.8 554,509 - carB LU632_RS02750 0.32 -2.9 554,541 + carB LU632_RS02750 0.33 -2.2 554,541 + carB LU632_RS02750 0.33 -0.2 554,542 - carB LU632_RS02750 0.33 -1.1 554,860 + carB LU632_RS02750 0.43 -1.2 554,873 - carB LU632_RS02750 0.44 -0.2 554,890 + carB LU632_RS02750 0.44 -1.3 555,008 + carB LU632_RS02750 0.48 +0.8 555,009 - carB LU632_RS02750 0.48 -2.5 555,063 + carB LU632_RS02750 0.49 -3.6 555,063 + carB LU632_RS02750 0.49 +0.8 555,063 + carB LU632_RS02750 0.49 -1.8 555,063 + carB LU632_RS02750 0.49 -0.8 555,064 - carB LU632_RS02750 0.49 -2.2 555,067 + carB LU632_RS02750 0.50 -1.2 555,067 + carB LU632_RS02750 0.50 -1.8 555,067 + carB LU632_RS02750 0.50 +0.5 555,067 + carB LU632_RS02750 0.50 -1.3 555,067 + carB LU632_RS02750 0.50 -0.8 555,067 + carB LU632_RS02750 0.50 +0.8 555,067 + carB LU632_RS02750 0.50 -0.6 555,068 - carB LU632_RS02750 0.50 -2.7 555,068 - carB LU632_RS02750 0.50 -1.1 555,068 - carB LU632_RS02750 0.50 -1.7 555,068 - carB LU632_RS02750 0.50 -0.4 555,068 - carB LU632_RS02750 0.50 -1.9 555,068 - carB LU632_RS02750 0.50 +0.4 555,068 - carB LU632_RS02750 0.50 -1.2 555,068 - carB LU632_RS02750 0.50 -1.9 555,136 - carB LU632_RS02750 0.52 +1.2 555,212 - carB LU632_RS02750 0.54 -0.2 555,338 + carB LU632_RS02750 0.58 +1.4 555,339 - carB LU632_RS02750 0.58 -2.2 555,633 + carB LU632_RS02750 0.67 -2.2 555,633 + carB LU632_RS02750 0.67 -1.8 555,634 - carB LU632_RS02750 0.67 -1.1 555,913 - carB LU632_RS02750 0.76 -0.8 555,950 - carB LU632_RS02750 0.77 -1.5 556,146 + carB LU632_RS02750 0.83 -1.2 556,147 - carB LU632_RS02750 0.83 -2.4 556,147 - carB LU632_RS02750 0.83 -0.1 556,355 + carB LU632_RS02750 0.89 -1.9 556,355 + carB LU632_RS02750 0.89 -1.8 556,355 + carB LU632_RS02750 0.89 -1.1 556,356 - carB LU632_RS02750 0.90 -1.8 556,468 + -1.4 556,499 - -1.2 556,500 + -1.7 556,500 + +3.1 556,501 - -3.2 556,501 - -1.3 556,501 - -0.7 556,501 - -2.1 556,501 - -3.5 556,501 - -1.0 556,501 - -0.8 556,553 - -0.9 556,591 + -2.4 556,611 + +0.2 556,673 + -1.2 556,674 - -3.3 556,681 + -0.1 556,709 + -0.8 556,840 - carA LU632_RS02755 0.12 -1.5 556,840 - carA LU632_RS02755 0.12 +1.3 556,869 + carA LU632_RS02755 0.14 -1.1 556,869 + carA LU632_RS02755 0.14 -2.5 556,870 - carA LU632_RS02755 0.14 -1.2 556,947 + carA LU632_RS02755 0.21 +0.2 556,947 + carA LU632_RS02755 0.21 -0.9 556,950 + carA LU632_RS02755 0.21 -3.8 557,108 + carA LU632_RS02755 0.35 -1.5 557,108 + carA LU632_RS02755 0.35 -3.5 557,108 + carA LU632_RS02755 0.35 -2.1 557,236 - carA LU632_RS02755 0.46 -0.8 557,247 + carA LU632_RS02755 0.47 -3.0 557,248 - carA LU632_RS02755 0.47 -1.8 557,273 - carA LU632_RS02755 0.49 -2.0 557,458 - carA LU632_RS02755 0.65 +1.8 557,518 - carA LU632_RS02755 0.71 -4.2 557,518 - carA LU632_RS02755 0.71 -1.3 557,526 + carA LU632_RS02755 0.71 -0.5 557,526 + carA LU632_RS02755 0.71 -0.2 557,527 - carA LU632_RS02755 0.71 -0.8 557,552 + carA LU632_RS02755 0.74 -1.5 557,611 - carA LU632_RS02755 0.79 -1.1 557,685 - carA LU632_RS02755 0.85 -2.3
Or see this region's nucleotide sequence