Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01295 and LU632_RS01300 are separated by 9 nucleotides LU632_RS01300 and LU632_RS01305 overlap by 4 nucleotides LU632_RS01305 and LU632_RS01310 are separated by 160 nucleotides LU632_RS01310 and LU632_RS01315 are separated by 69 nucleotides
LU632_RS01295: LU632_RS01295 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 269,047 to 269,703
_RS01295
LU632_RS01300: LU632_RS01300 - L-ribulose-5-phosphate 3-epimerase, at 269,713 to 270,573
_RS01300
LU632_RS01305: LU632_RS01305 - L-ribulose-5-phosphate 4-epimerase, at 270,570 to 271,259
_RS01305
LU632_RS01310: LU632_RS01310 - hypothetical protein, at 271,420 to 271,842
_RS01310
LU632_RS01315: LU632_RS01315 - IS110 family transposase, at 271,912 to 272,647
_RS01315
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 269.606 kb on + strand, within LU632_RS01295 at 269.607 kb on - strand, within LU632_RS01295 at 269.743 kb on + strand at 269.743 kb on + strand at 269.911 kb on - strand, within LU632_RS01300 at 270.006 kb on + strand, within LU632_RS01300 at 270.007 kb on - strand, within LU632_RS01300 at 270.007 kb on - strand, within LU632_RS01300 at 270.232 kb on + strand, within LU632_RS01300 at 270.330 kb on + strand, within LU632_RS01300 at 270.330 kb on + strand, within LU632_RS01300 at 270.330 kb on + strand, within LU632_RS01300 at 270.330 kb on + strand, within LU632_RS01300 at 270.330 kb on + strand, within LU632_RS01300 at 270.331 kb on - strand, within LU632_RS01300 at 270.331 kb on - strand, within LU632_RS01300 at 270.331 kb on - strand, within LU632_RS01300 at 270.331 kb on - strand, within LU632_RS01300 at 270.331 kb on - strand, within LU632_RS01300 at 270.331 kb on - strand, within LU632_RS01300 at 270.354 kb on + strand, within LU632_RS01300 at 270.605 kb on + strand at 270.605 kb on + strand at 270.608 kb on + strand at 270.609 kb on - strand at 270.609 kb on - strand at 270.816 kb on + strand, within LU632_RS01305 at 270.851 kb on + strand, within LU632_RS01305 at 270.852 kb on - strand, within LU632_RS01305 at 270.927 kb on + strand, within LU632_RS01305 at 270.962 kb on - strand, within LU632_RS01305 at 270.962 kb on - strand, within LU632_RS01305 at 271.046 kb on + strand, within LU632_RS01305 at 271.112 kb on - strand, within LU632_RS01305 at 271.197 kb on + strand at 271.197 kb on + strand at 271.198 kb on - strand at 271.201 kb on + strand at 271.242 kb on + strand at 271.243 kb on - strand at 271.245 kb on + strand at 271.246 kb on - strand at 271.274 kb on - strand at 271.450 kb on + strand at 271.451 kb on - strand at 271.452 kb on + strand at 271.491 kb on + strand, within LU632_RS01310 at 271.491 kb on + strand, within LU632_RS01310 at 271.492 kb on - strand, within LU632_RS01310 at 271.492 kb on - strand, within LU632_RS01310 at 271.492 kb on - strand, within LU632_RS01310 at 271.492 kb on - strand, within LU632_RS01310 at 271.498 kb on + strand, within LU632_RS01310 at 271.541 kb on + strand, within LU632_RS01310 at 271.541 kb on + strand, within LU632_RS01310 at 271.541 kb on + strand, within LU632_RS01310 at 271.567 kb on + strand, within LU632_RS01310 at 271.568 kb on - strand, within LU632_RS01310 at 271.568 kb on - strand, within LU632_RS01310 at 271.776 kb on + strand, within LU632_RS01310 at 271.776 kb on + strand, within LU632_RS01310 at 271.776 kb on + strand, within LU632_RS01310 at 271.777 kb on - strand, within LU632_RS01310 at 271.777 kb on - strand, within LU632_RS01310 at 271.828 kb on - strand at 271.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 269,606 + LU632_RS01295 0.85 -0.3 269,607 - LU632_RS01295 0.85 -1.0 269,743 + -0.1 269,743 + +0.1 269,911 - LU632_RS01300 0.23 +1.0 270,006 + LU632_RS01300 0.34 -0.2 270,007 - LU632_RS01300 0.34 -0.0 270,007 - LU632_RS01300 0.34 +0.2 270,232 + LU632_RS01300 0.60 -2.2 270,330 + LU632_RS01300 0.72 +1.2 270,330 + LU632_RS01300 0.72 -0.6 270,330 + LU632_RS01300 0.72 -0.8 270,330 + LU632_RS01300 0.72 -0.4 270,330 + LU632_RS01300 0.72 +1.8 270,331 - LU632_RS01300 0.72 -1.2 270,331 - LU632_RS01300 0.72 +0.9 270,331 - LU632_RS01300 0.72 +2.5 270,331 - LU632_RS01300 0.72 +0.1 270,331 - LU632_RS01300 0.72 -0.4 270,331 - LU632_RS01300 0.72 -2.5 270,354 + LU632_RS01300 0.74 +1.3 270,605 + -0.4 270,605 + +0.8 270,608 + +0.8 270,609 - -2.7 270,609 - +1.9 270,816 + LU632_RS01305 0.36 +1.4 270,851 + LU632_RS01305 0.41 +0.7 270,852 - LU632_RS01305 0.41 +1.5 270,927 + LU632_RS01305 0.52 +1.9 270,962 - LU632_RS01305 0.57 -0.9 270,962 - LU632_RS01305 0.57 +0.6 271,046 + LU632_RS01305 0.69 +1.1 271,112 - LU632_RS01305 0.79 +1.2 271,197 + +0.1 271,197 + -2.1 271,198 - +0.2 271,201 + +0.8 271,242 + -0.6 271,243 - +0.7 271,245 + +1.0 271,246 - +0.5 271,274 - +1.2 271,450 + -2.8 271,451 - +0.2 271,452 + +0.2 271,491 + LU632_RS01310 0.17 +1.5 271,491 + LU632_RS01310 0.17 -0.7 271,492 - LU632_RS01310 0.17 +0.8 271,492 - LU632_RS01310 0.17 +0.3 271,492 - LU632_RS01310 0.17 +0.5 271,492 - LU632_RS01310 0.17 +0.5 271,498 + LU632_RS01310 0.18 -0.8 271,541 + LU632_RS01310 0.29 +0.4 271,541 + LU632_RS01310 0.29 -0.0 271,541 + LU632_RS01310 0.29 +0.6 271,567 + LU632_RS01310 0.35 +0.5 271,568 - LU632_RS01310 0.35 +1.8 271,568 - LU632_RS01310 0.35 +2.4 271,776 + LU632_RS01310 0.84 -2.2 271,776 + LU632_RS01310 0.84 +0.3 271,776 + LU632_RS01310 0.84 -3.3 271,777 - LU632_RS01310 0.84 -1.6 271,777 - LU632_RS01310 0.84 -0.6 271,828 - -0.5 271,930 - +0.8
Or see this region's nucleotide sequence